Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16e24
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 194 2e-50
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.085
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.085
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.085
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 30 0.79
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z81491-1|CAB04019.1| 181|Caenorhabditis elegans Hypothetical pr... 28 4.2
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 28 4.2
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 28 4.2
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 27 5.6
AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in... 27 7.4
AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 27 7.4
AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in ... 27 7.4
AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q... 27 7.4
Z81035-1|CAB02735.1| 221|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 9.8
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p... 27 9.8
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 27 9.8
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 27 9.8
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 27 9.8
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 27 9.8
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 194 bits (474), Expect = 2e-50
Identities = 93/142 (65%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
Frame = -3
Query: 450 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 271
MTNSKG RRGTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 270 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 91
TGR++NVT A+G+IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+ K AK
Sbjct: 61 TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120
Query: 90 AAGKTV-NLKRQPAPPKAAHIV 28
+AG+ V LKR P P+ AH V
Sbjct: 121 SAGQPVPALKRLPVAPRGAHTV 142
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.085
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 266 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 403
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.085
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 266 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 403
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.085
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 266 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 403
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 30.3 bits (65), Expect = 0.79
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 349 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 212
Q RHC Q C S Y W+ RSRV +C+ + Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 112 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 267
LILFD+LK VL ++GVL + I+ L A L +TE + + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 112 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 267
LILFD+LK VL ++GVL + I+ L A L +TE + + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251
>Z81491-1|CAB04019.1| 181|Caenorhabditis elegans Hypothetical
protein D1086.1 protein.
Length = 181
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 292 TQSIPW--KDRSRVQRDCSCSRCDCQQACSRKDYTEA 188
T+ + W D+SR+ D C++ ++ C KD+ +A
Sbjct: 120 TECVQWYFSDKSRMSTDQKCAQFKAKKQCIEKDFGKA 156
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/68 (29%), Positives = 25/68 (36%)
Frame = -2
Query: 256 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 77
Q CSC + Q+CS + Q P +C Q Q + Q A Q CRQ
Sbjct: 34 QSQCSCQQVQQTQSCSCQSAPVQQQAP--SCSCAQPQQTQTVQVQSTQCAPACQQSCRQQ 91
Query: 76 RQPEETAS 53
Q S
Sbjct: 92 CQSAPAVS 99
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/68 (29%), Positives = 25/68 (36%)
Frame = -2
Query: 256 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 77
Q CSC + Q+CS + Q P +C Q Q + Q A Q CRQ
Sbjct: 34 QSQCSCQQVQQTQSCSCQSAPVQQQAP--SCSCAQPQQTQTVQVQSTQCAPACQQSCRQQ 91
Query: 76 RQPEETAS 53
Q S
Sbjct: 92 CQSAPAVS 99
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 256 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 161
++ C C+ R +C R YT+ QY C +CQ
Sbjct: 26 RQSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 256 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 161
++ C C+ R +C R YT+ QY C +CQ
Sbjct: 26 RQSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57
>AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 8 protein.
Length = 445
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 256 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 77
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 76 RQPEETAS 53
Q + AS
Sbjct: 89 CQQQCQAS 96
>AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 7 protein.
Length = 438
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 256 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 77
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 76 RQPEETAS 53
Q + AS
Sbjct: 89 CQQQCQAS 96
>AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 6 protein.
Length = 388
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 256 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 77
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 76 RQPEETAS 53
Q + AS
Sbjct: 89 CQQQCQAS 96
>AF016451-3|AAB66001.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 5
protein.
Length = 388
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 256 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 77
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 76 RQPEETAS 53
Q + AS
Sbjct: 89 CQQQCQAS 96
>Z81035-1|CAB02735.1| 221|Caenorhabditis elegans Hypothetical
protein C15H11.1 protein.
Length = 221
Score = 26.6 bits (56), Expect = 9.8
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Frame = -2
Query: 430 PPR--HQGLVRSQVPHTWNYSALHVHESV-----QSWRHCRHQRQWCSSKGYATQSIPWK 272
PP+ H+ V YSAL +V QS +H R +RQ S++ +T++I
Sbjct: 110 PPQGEHKLRVTPSTEEQMEYSALPPTPTVASSIKQSTKHKRTERQLQSTQKMSTENITSV 169
Query: 271 DRSRVQRDCSCSRCD 227
S Q++C D
Sbjct: 170 QASTTQQECPTQEDD 184
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -2
Query: 481 SVKLCNTRLEDDELQGLP--PRHQGLVRSQVPHTWNYSALHVHESVQSWRH 335
S C R +D ++GL P GL + T N S LH+ + +RH
Sbjct: 2557 STVFCRLRFSEDRIKGLGLWPYLPGLYFELLLDTMNRSLLHIIDPHLHYRH 2607
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -2
Query: 481 SVKLCNTRLEDDELQGLP--PRHQGLVRSQVPHTWNYSALHVHESVQSWRH 335
S C R +D ++GL P GL + T N S LH+ + +RH
Sbjct: 2554 STVFCRLRFSEDRIKGLGLWPYLPGLYFELLLDTMNRSLLHIIDPHLHYRH 2604
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -2
Query: 481 SVKLCNTRLEDDELQGLP--PRHQGLVRSQVPHTWNYSALHVHESVQSWRH 335
S C R +D ++GL P GL + T N S LH+ + +RH
Sbjct: 2557 STVFCRLRFSEDRIKGLGLWPYLPGLYFELLLDTMNRSLLHIIDPHLHYRH 2607
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -2
Query: 481 SVKLCNTRLEDDELQGLP--PRHQGLVRSQVPHTWNYSALHVHESVQSWRH 335
S C R +D ++GL P GL + T N S LH+ + +RH
Sbjct: 2554 STVFCRLRFSEDRIKGLGLWPYLPGLYFELLLDTMNRSLLHIIDPHLHYRH 2604
>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
protein F47C12.1 protein.
Length = 1827
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 238 SRCDCQQACSRKDYTEAHQYPC*AC 164
S +C+QAC Y+ + PC AC
Sbjct: 1610 SASECKQACKTGTYSNSGLEPCSAC 1634
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 72 NLKRQPAPPKAAHI 31
NL+R+PAPPK H+
Sbjct: 462 NLRRRPAPPKQNHV 475
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 256 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 143
++ C C+ + +C R YT+ QY C VQT
Sbjct: 26 RQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 256 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 143
++ C C+ + +C R YT+ QY C VQT
Sbjct: 26 RQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 256 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 143
++ C C+ + +C R YT+ QY C VQT
Sbjct: 26 RQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 256 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 143
++ C C+ + +C R YT+ QY C VQT
Sbjct: 26 RQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,343,943
Number of Sequences: 27780
Number of extensions: 232692
Number of successful extensions: 860
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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