Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e23
         (198 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    24   3.2  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    23   4.2  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    23   4.2  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   5.6  
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    23   7.4  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    22   9.7  

>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 7   IGRRKNERGAHTNDVDIYNKSDSCQLI 87
           IG  +NE  A  + +D  N SDSC L+
Sbjct: 144 IGELQNE-SALQHFIDAANSSDSCHLV 169


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 77  QLSLLLYMSTSFVCAPLSFLR 15
           +L++  +  T+F+CA L+FLR
Sbjct: 441 KLNIRTFYLTAFLCALLNFLR 461


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 85  STDSCHSCYICQ 50
           ST++CH+C +C+
Sbjct: 373 STNTCHTCPVCR 384


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 112 FPKRIFMSISTDSCHSCYICQRRLCVRPFRSCV 14
           +PK  F+     + H C I Q R   R  R+C+
Sbjct: 290 YPKNTFL-FEVMARHCCEIGQSRFGARAIRACL 321


>SPBC146.10 |mug57||meiotically upregulated gene
          Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 53 STSFVCAPLSFLRRPMS 3
          +TSF+ A LSF +RP++
Sbjct: 15 TTSFISAVLSFNQRPIN 31


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 7   IGRRKNERGAHTNDVDIYNKSDSCQL 84
           + +R+N      ND+D+  ++D  Q+
Sbjct: 44  LNKRRNLNAVLQNDIDVEEEADQSQV 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,280
Number of Sequences: 5004
Number of extensions: 10247
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)