Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e23
         (198 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             21   4.0  
DQ103706-1|AAZ43087.1|  344|Anopheles gambiae pk-1 receptor prot...    21   7.1  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    20   9.3  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    20   9.3  

>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 135 GPVLELYNFLNASLCQY 85
           GP    +   N SLCQY
Sbjct: 244 GPPCAPHGLFNVSLCQY 260


>DQ103706-1|AAZ43087.1|  344|Anopheles gambiae pk-1 receptor
           protein.
          Length = 344

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 105 LGNY-TILTLALKRSLHFNSLQYLFN 179
           +GN  T + +A  RS+H  +  YLF+
Sbjct: 61  VGNISTCIVIARNRSMHTATNYYLFS 86


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 14  DARTKGAHTQTTLTY 58
           +++TK  HT  ++TY
Sbjct: 475 NSKTKSTHTPKSITY 489


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 85  STDSCHSCYICQR 47
           S D  H C +C+R
Sbjct: 150 SEDRPHKCVVCER 162


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,717
Number of Sequences: 2352
Number of extensions: 2204
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 43
effective length of database: 462,843
effective search space used: 10182546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)