Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e23
         (198 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z37983-9|CAO82014.1|  227|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U21317-2|AAA62531.3|  729|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 13  RRKNERGAHTNDVDIYNKSD 72
           RR+ E G+ T DVDIY+  D
Sbjct: 617 RREPEVGSDTGDVDIYDDGD 636


>Z37983-9|CAO82014.1|  227|Caenorhabditis elegans Hypothetical
           protein B0393.9b protein.
          Length = 227

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 133 ASVRIV*FPKRIFMSISTDSCHSCYICQRRLC 38
           +S + V  PK+    IS D CH+C     R C
Sbjct: 21  SSCKTVICPKQPGKLISCDMCHTCLDSGSRFC 52


>U21317-2|AAA62531.3|  729|Caenorhabditis elegans Hypothetical
           protein B0495.5 protein.
          Length = 729

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 106 KRIFMSISTDSCHSCYICQR 47
           K IF+S+   +CH C++ ++
Sbjct: 55  KPIFLSVGYSTCHWCHVMEK 74


>Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical
          protein C49F5.4 protein.
          Length = 343

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -3

Query: 76 SCHSCYICQRRLCVR--PFRSC 17
          SC+SC I  RRL VR  P + C
Sbjct: 24 SCNSCKIFFRRLIVRTVPIKKC 45


>U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical
           protein F33G12.4 protein.
          Length = 453

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 22  NERGAHTNDVDIYNKSDSCQLILT*RCV*EII 117
           N  GAH  D+D+++K    Q +    C  E+I
Sbjct: 180 NPIGAHNRDLDVFSKLKQLQSLEMRSCSLELI 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,848,408
Number of Sequences: 27780
Number of extensions: 57056
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)