Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e23
         (198 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   1.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   1.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    19   4.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    19   5.7  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    19   5.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    19   7.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    19   7.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   7.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   7.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    19   7.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    18   9.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    18   9.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    18   9.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   9.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    18   9.9  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/31 (22%), Positives = 17/31 (54%)
 Frame = -3

Query: 100 IFMSISTDSCHSCYICQRRLCVRPFRSCVVQ 8
           + M+I+ +  ++  IC R L  + +  C+ +
Sbjct: 16  LMMAIAVELPNNWRICDRSLPQKEYNQCIAE 46


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +1

Query: 4   LIGRRKNERGAHTNDVDIYNKSDS 75
           ++G+R+ +   ++ DV++ NK +S
Sbjct: 378 VLGQRQWQFDVYSKDVELANKMES 401


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 5/13 (38%), Positives = 7/13 (53%)
 Frame = +1

Query: 130 WPLNAAYILIVYN 168
           WP    Y+ + YN
Sbjct: 355 WPATTNYLYLTYN 367


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 105 LGNY-TILTLALKRSLHFNSLQYLFN 179
           +GN  T + +A  +S+H  +  YLF+
Sbjct: 69  VGNVSTCVVIARNKSMHTATNYYLFS 94


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 70 HSCYICQRRLCVR 32
          + C IC+R  C R
Sbjct: 36 YRCVICERVYCSR 48


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 81  VDIDIKMRLGNYTI 122
           +  D+K+  G+YTI
Sbjct: 421 IKTDLKLASGDYTI 434


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 108 LNASLCQYQLTAVTLVIYVNVVCVCA 31
           L  SLC+ +     +  YV+V+ + A
Sbjct: 109 LGVSLCKIRAYVSEMSSYVSVLTIVA 134


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 5/21 (23%), Positives = 12/21 (57%)
 Frame = -1

Query: 63  VIYVNVVCVCAPFVLASSNEY 1
           ++++   C+  P +L   NE+
Sbjct: 164 LVWLGAACISLPPLLIMGNEH 184


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 4/10 (40%), Positives = 7/10 (70%)
 Frame = -1

Query: 57  YVNVVCVCAP 28
           +V ++C C P
Sbjct: 401 FVRILCACCP 410


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
          protein-1 protein.
          Length = 128

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -3

Query: 79 DSCHSC 62
          DSCH C
Sbjct: 41 DSCHKC 46


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -2

Query: 44  FVCAPLSFLRRPMS 3
           ++C  + FL  P+S
Sbjct: 227 YICEDMRFLDEPLS 240


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 64  CYICQRRLCVRPFRSCV 14
           C +CQRR   +   SC+
Sbjct: 274 CSLCQRRFEEQGNYSCL 290


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 7   IGRRKNERGAHT 42
           IG+ K+E G+H+
Sbjct: 267 IGKFKHEAGSHS 278


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 81   LTAVTLVIYVNVVCVC 34
            + A  LVI V V+ +C
Sbjct: 1591 VVAAILVIIVAVIVIC 1606


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -2

Query: 44  FVCAPLSFLRRPMS 3
           ++C  + FL  P+S
Sbjct: 227 YICEDMRFLDEPLS 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,892
Number of Sequences: 438
Number of extensions: 738
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)