Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e21
         (145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    23   5.5  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    23   5.5  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    22   9.6  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    22   9.6  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 91  TTDVMSISNYAFCKFD 138
           T DVM + N  FCK D
Sbjct: 279 TPDVMDVINKCFCKND 294


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +3

Query: 36  CSNLSTVHWQLLFLMNTIDD 95
           CS + ++ W++  L+ T++D
Sbjct: 106 CSTIDSIKWRMHQLVKTVED 125


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 47   EYGTLAAVVFNEYNRRLMSCLYRITRSVNLMA 142
            E  T  ++ FN+  R+L     R+T  V+L A
Sbjct: 1002 EPSTFVSLYFNDILRKLTDLDSRVTSKVSLKA 1033


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 126 ERVIRYRHDISRRLYSLKTTAANVPYSNYYMYKSVLSIV 10
           ++++   HD   RLY+LK    +VP+      ++ +SI+
Sbjct: 669 KKLLAIPHD-KLRLYALKVLKLSVPFLGLKWKQANMSII 706


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,053
Number of Sequences: 5004
Number of extensions: 7372
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 28
effective length of database: 2,222,366
effective search space used: 42224954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)