Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e21
         (145 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    26   4.8  
10_02_0136 + 5719136-5719780,5719923-5720237                           25   6.4  

>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 67   SCQCTVLKLLHV*ICTFY 14
            SCQC +L +L+V  C+FY
Sbjct: 1394 SCQCAILVILYV--CSFY 1409


>10_02_0136 + 5719136-5719780,5719923-5720237
          Length = 319

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 59  LAAVVFNEYNRRLMSCLY 112
           +  + FN+Y RRL +C+Y
Sbjct: 189 VVVIGFNKYRRRLFTCVY 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,449
Number of Sequences: 37544
Number of extensions: 36124
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 14,793,348
effective HSP length: 28
effective length of database: 13,742,116
effective search space used: 261100204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)