Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16e12
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 29 0.64
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 29 1.1
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 28 2.0
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 27 3.4
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 27 3.4
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 27 3.4
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 27 4.5
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.5
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb... 26 6.0
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.5 bits (63), Expect = 0.64
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = -3
Query: 740 SGKLSVRENYLPEPQTPVFAK-LKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQ 564
S + +R + + P ++ +K +P+N E+ D + + + + STP Q
Sbjct: 342 SSDIGLRSDSSKPNEAPTSSENIKADQPENSTKQENPEEDMQIKD-AEEHSNLESTPAAQ 400
Query: 563 QLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEG 456
Q + + + + + PA+ + EE + EG
Sbjct: 401 QTSEVEANNHQEKPSSLPAVEQINVNEENNTPETEG 436
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 839 RLSDPMPEPDRLHYEKELAKFNDRYFREYLDNFSGKLSVRENYLPEPQT 693
+L P P +HY E K Y +EYL + V YLPE Q+
Sbjct: 536 KLKIPFSIPTNVHYSSE--KDIPSYSQEYLGKSHYPIGVSSRYLPEFQS 582
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 443 FLKPSPRRLLAPFPRWAPWGISPAYQPYATSTILASSLQVAVRSVC*PS 589
F+ +P+R + P + P+G+ P PY L+S +V + PS
Sbjct: 110 FIPKNPKRSIYYDPIFNPYGVPPPGMPYREKEELSSETDESVIDIPLPS 158
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 406 RDGRKVSIYGRQDTVQHDLYRVRRFLIIHLCL 311
+D + SI RQDT H+L R L LCL
Sbjct: 208 QDVERTSILQRQDTQDHELKPKRSGLFSSLCL 239
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 27.1 bits (57), Expect = 3.4
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 806 LHYEKELAKFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFAKLKPGRPKNLFDDE 639
L Y K+ FNDR+ E + + K+S +N+ P T F + PK LF E
Sbjct: 894 LRYNKDAKNFNDRFICESVYHLHDKVSKFQNF-PITNTNSFLE-----PKMLFATE 943
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 707 PEPQTPVFAKLKP--GRPKNLFDDESSSNDQRERSKSPSK 594
P P FA+ KP G + DDES S+ RS++PS+
Sbjct: 27 PRKYIPPFARDKPSAGAAPAVGDDESVSSRGSSRSQTPSE 66
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 4.5
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = -3
Query: 818 EPDRLHYEKELAKFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFAKLKPGRPKNLFDDE 639
E L+ ++ + +N+ R Y D++S + ++L P R N D+
Sbjct: 198 ERKSLNSKRHVDNYNENRRRHY-DSYSSYDELERRRSSNESYSRRSEL-PRRDYNRHDER 255
Query: 638 S--SSNDQRERSKSPSKAKTVSTPTLQQ 561
S + +RERS SPS K S P + +
Sbjct: 256 ERYSYHRRRERSNSPSYTKNESIPVVDR 283
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 4.5
Identities = 28/113 (24%), Positives = 43/113 (38%)
Frame = -3
Query: 698 QTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRA 519
Q P + P L S+N + SK T T + LR S S R
Sbjct: 352 QAPTTSSTSVISPDPLQTAAPSANVNEVIASLESKVVTRRTGSGNNYRVGLRNVSGSER- 410
Query: 518 DTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESKHLRTPRHSP 360
T ++ P+E ++P + +S TPT +T + +S R+ SP
Sbjct: 411 -TKSLSKESPVEPEKPALPDATSSSTPTTENKESWT-NQGIKSSQQRSANASP 461
>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 178
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 824 MPEPDRLHYEKELAKFNDRYFREYLDNFS 738
+P DR ++LAK ND++FR D S
Sbjct: 23 LPFHDRPAEMRDLAKCNDQFFRNVRDTIS 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,581
Number of Sequences: 5004
Number of extensions: 71866
Number of successful extensions: 233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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