Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16e12
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 33 0.29
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 33 0.29
01_01_0012 + 71903-72935,73468-73981,74619-76008 32 0.68
02_04_0466 - 23149906-23150046,23150129-23150279,23151684-231517... 31 0.89
08_01_0727 + 6567935-6568112,6568197-6568912,6569061-6569162,656... 31 1.2
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093... 31 1.6
12_02_0674 - 21745321-21746223,21746229-21747608 31 1.6
09_03_0025 - 11665969-11666417,11666490-11666594,11666667-116668... 31 1.6
06_03_1028 - 27004229-27004566,27005554-27005772,27006254-270063... 30 2.7
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 29 3.6
08_02_0379 - 16506775-16506950,16507037-16507096,16507187-165073... 29 4.8
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 4.8
01_01_0545 - 4002659-4003307,4003415-4003887 29 4.8
11_06_0610 - 25449085-25453284 29 6.3
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 29 6.3
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645... 29 6.3
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 28 8.3
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 33.1 bits (72), Expect = 0.29
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Frame = -3
Query: 662 PKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEPIE 483
PK D + E++ K S P + R S SRR ++P P P
Sbjct: 231 PKRDVVDHNKVGPSAEKATKQQPRKPAS-PQRKPAPSPRRRSPPSRRVESPRCRPDSPPI 289
Query: 482 EKEPTDAEGRASGTPT-DPGYVQYTAKRWPESKHLRTPRH 366
+ + R GTP+ PG P + LR+PRH
Sbjct: 290 RRRTAPSPIRHGGTPSRRPGSPIRRRSPSPPPRRLRSPRH 329
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 33.1 bits (72), Expect = 0.29
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Frame = -3
Query: 662 PKNLFDDESSSNDQR--ERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEP 489
P+ D ESS +R +RS+SPS ++ S + R +SRR DTP+
Sbjct: 2 PRKERDSESSRRRRRRRQRSRSPSDSEEASDSSGSPRRSRSRNRRKSRRRDTPSSSDASD 61
Query: 488 IEEKEP-TDAEGRA--------SGTPTDPGYVQYTAKR 402
+ + +D+ GR G T+ V+Y AK+
Sbjct: 62 SQASDSGSDSGGRVRRRSGSRKKGEVTEEQIVEYMAKK 99
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 31.9 bits (69), Expect = 0.68
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 683 AKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQ--QLEDYLRGSSRSRRADTP 510
+KL P R D SS +R RS+S K + + ++ED R S R R D
Sbjct: 652 SKLSPTR-----DHHSSRRSRRSRSRSQEKNRNSDKKDSKKSEMEDKKRRSDRGNRGDKD 706
Query: 509 AIFPMEPIEEKE 474
+ +P+E+K+
Sbjct: 707 EKYLKDPMEDKK 718
>02_04_0466 -
23149906-23150046,23150129-23150279,23151684-23151785,
23151893-23152110,23152203-23152325,23152863-23152991,
23153191-23153274,23154009-23154104,23154735-23154816,
23155047-23155117,23155269-23155363,23156090-23156276,
23156586-23156757,23157800-23157948,23158578-23158701,
23158836-23158991,23159101-23159247,23160470-23160489
Length = 748
Score = 31.5 bits (68), Expect = 0.89
Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 2/122 (1%)
Frame = -3
Query: 755 YLDNFSGKLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERS--KSPSKAKTV 582
YL+ G+ ++ E T F ++ +P L+D N E S P KA V
Sbjct: 598 YLEEPEGQYLAQQLLSKELFTKTFHTVQMEQPARLYDGREGQNRPEEMSWIAPPRKANVV 657
Query: 581 STPTLQQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKR 402
+ P Y + SRRA + ++ +E T A G D A+
Sbjct: 658 AIPCAATATAYF-SIAASRRAPSMSM-------SREKTQCAAVADGRAHDTAVRTELAQE 709
Query: 401 WP 396
WP
Sbjct: 710 WP 711
>08_01_0727 +
6567935-6568112,6568197-6568912,6569061-6569162,
6569236-6569547,6569862-6570299
Length = 581
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = -3
Query: 641 ESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDA 462
ES+ + R++ +KA ++ +SR R D +F + + PT
Sbjct: 194 ESNCSPLRQKDVEGAKAVVAIAAAKVAKGGSIKKTSRKRLVDVGRVFSDDKSSNETPTSP 253
Query: 461 EGRASGTPTDPG 426
GR+ G T PG
Sbjct: 254 AGRSLGLSTAPG 265
>12_02_0693 -
22207582-22207620,22208421-22208597,22209258-22209347,
22210215-22210280,22210473-22210570,22210669-22210789,
22210875-22212477,22213332-22213915
Length = 925
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Frame = -3
Query: 692 PVFAKLKP-GRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRAD 516
P+ K KP G DD + + S + + ++ +LED+ G S+S D
Sbjct: 392 PLAVKQKPHGSQAKRKDDNYPRRSNQNHNHHRSSSNQAGSSSIDELEDFAMGKSQSSAYD 451
Query: 515 TPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQY 414
F E E A A D ++
Sbjct: 452 NANPFNEEEFEHSSSAAASAAAMKEAMDKAEAKF 485
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -3
Query: 605 SPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTD 432
S + KT STP+ L +S S+ + TP+ P+ K PT A TPTD
Sbjct: 582 STATGKTSSTPSTSPLS-----TSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTD 634
>09_03_0025 -
11665969-11666417,11666490-11666594,11666667-11666856,
11666933-11667120,11667240-11667571,11667654-11667940,
11668027-11668911
Length = 811
Score = 30.7 bits (66), Expect = 1.6
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Frame = -3
Query: 707 PEPQTPVFA-KLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSR 531
P+PQT A + P + K + DD+ +D+ SP+K + P ++L R
Sbjct: 329 PQPQTSKLADQTGPRKRKLVLDDDEGDDDKSGDKGSPNKPPKRTMPR-KKLAGRAIPKIR 387
Query: 530 SRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESKHLRTPRHSPT 357
+ I P ++ +P E S P Q TA+ P H R +P+
Sbjct: 388 TSSRKPSDIDPSG--KDPDPAMTEQNISKDPEPTNENQPTAESQPTGAHASGDRANPS 443
>06_03_1028 -
27004229-27004566,27005554-27005772,27006254-27006390,
27007172-27007509
Length = 343
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -3
Query: 704 EPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQ---QLEDYLRGSS 534
+PQT VFA P++LFDD + + + + A T S+ + QL + S
Sbjct: 140 KPQTDVFAFGSGTLPRSLFDDRQQISFAWDNNAPLNHANTTSSSSWTSDLQLSQVMDISK 199
Query: 533 RSRRA 519
RSR+A
Sbjct: 200 RSRKA 204
>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 686 FAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQ 561
FA KP R N FD +S D R + P++A +V P Q+
Sbjct: 1275 FASKKPSRSSNPFDSDS---DDGGREQRPARASSVPPPADQR 1313
>08_02_0379 -
16506775-16506950,16507037-16507096,16507187-16507375,
16508131-16508224,16508276-16508300,16508690-16508796,
16508903-16509021,16510520-16510658
Length = 302
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 155 YYNKLSRYNLQHTIIMFWYHYIFSHL 232
Y+ K + Y+L H I+ WY +I S L
Sbjct: 101 YFKKKNVYDLHHGILGIWYSHILSKL 126
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 620 RERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPA 507
R +S+ PSK+++ P + Y R S S R+ +PA
Sbjct: 544 RSKSRDPSKSRSPDAPAKKGSSKYNRRRSSSSRSSSPA 581
>01_01_0545 - 4002659-4003307,4003415-4003887
Length = 373
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 434 LWVFLKPSPRRLLAPFPRWAPWGISPAYQ 520
L FL P P +AP P P G SPAY+
Sbjct: 298 LGYFLGPPPDAEVAPLPEAVPAGRSPAYR 326
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 6.3
Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 5/126 (3%)
Frame = -3
Query: 719 ENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQL--EDYL 546
E P TP + G+ ESSS +E P+ S P+ ++
Sbjct: 878 ETKSPPTLTPEISPPPEGKSPPSHTPESSSPPSKESEPPPTPTPKSSPPSHEEYVPPSPA 937
Query: 545 RGSSRSRRADTPAIFPME---PIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESKHLRT 375
+ + P+ P P EE EP + S P+ YV + +
Sbjct: 938 KSTPPPEEKSPPSHTPESSSPPSEESEPPPSPTPKSSPPSHEEYVPPSPAKSTPPPEKPL 997
Query: 374 PRHSPT 357
P H+PT
Sbjct: 998 PPHTPT 1003
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/81 (27%), Positives = 33/81 (40%)
Frame = -3
Query: 665 RPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEPI 486
RP + DDE +S Q E S + S P ++ ++ L SR +P + M+
Sbjct: 1730 RPSYVKDDEDNSASQSEESSEEN-----SEPMNEEYDELLPDYSRDNSGSSP-LQMMDDG 1783
Query: 485 EEKEPTDAEGRASGTPTDPGY 423
+ DAEG G Y
Sbjct: 1784 SDDNEEDAEGDEDGEEDGEDY 1804
>01_06_0781 +
31962661-31963089,31963174-31963228,31964310-31964557,
31965080-31965281,31965793-31965912,31965976-31966100,
31966182-31966288,31966726-31966792
Length = 450
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/82 (30%), Positives = 36/82 (43%)
Frame = -3
Query: 647 DDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPT 468
DDE + R SP A T S+P+ Q E GS+ + A + P P+ E +P
Sbjct: 17 DDEEEDDGDEPRPPSPPAAATSSSPS-PQTEG--EGSNPNPNAAASSAPPSPPLAE-DPA 72
Query: 467 DAEGRASGTPTDPGYVQYTAKR 402
AS P+ PG ++R
Sbjct: 73 GRRTLASPYPS-PGLPPLPSRR 93
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 350 KVMLDCVLASVNAYFPAISSPCIARSQDLW 439
K LDC++ VN + P S+ +A+ +D W
Sbjct: 822 KYRLDCLINVVNTHEPKASNGFVAKPEDEW 851
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,934,635
Number of Sequences: 37544
Number of extensions: 441738
Number of successful extensions: 1373
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -