Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e12
         (862 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    30   0.079
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    26   1.7  
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             24   5.2  
AY748847-1|AAV28193.1|  104|Anopheles gambiae cytochrome P450 pr...    23   9.0  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 0.079
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -3

Query: 722 RENYLPEPQTPVFAKLK-PG---RPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQL 558
           R N L  P +P+ +  K PG   RP+N+    SS +  R  SK  + AKT  TP+ Q L
Sbjct: 586 RPNALASPASPLKSPSKIPGLARRPENI----SSESRSRSTSKQRANAKTPETPSDQPL 640



 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +2

Query: 311 QTQVDNQKSSNPIKVMLDCVLASVNAYFPAISSPCIARSQDLWVFLKPSPRRLLAP 478
           +  +   +S+ P+      VL   N + P+  S  + R Q   +   P+P+  LAP
Sbjct: 41  ERSISGTESTKPVPT----VLGGPNLFAPSAVSSQLQRPQPTVLAASPAPQPSLAP 92


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 818 EPDRLHYEKELAKFNDRYFREYLDNFSGKLSVR 720
           +P+   YE+    +N ++  EY DNF+    +R
Sbjct: 710 KPNNYEYERNQNIYNSQFKVEYSDNFNSGYGLR 742


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 389 KHLRTPRHSPT*PL*GSTI-FDYPPV 315
           KHL+TP  SPT P  G  + F  P V
Sbjct: 102 KHLQTPEGSPTGPPTGIAVRFQTPDV 127


>AY748847-1|AAV28193.1|  104|Anopheles gambiae cytochrome P450
           protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 462 GVCWLLFLDGLH 497
           G+CW LFL  LH
Sbjct: 43  GMCWALFLLALH 54


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 836,716
Number of Sequences: 2352
Number of extensions: 17004
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 91786122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)