Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16e12
(862 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D63875-1|BAA09925.2| 1195|Homo sapiens KIAA0155 protein. 36 0.14
BC058914-1|AAH58914.1| 1173|Homo sapiens Ctr9, Paf1/RNA polymera... 36 0.14
U88666-1|AAC05299.1| 686|Homo sapiens serine kinase SRPK2 protein. 36 0.25
BC068547-1|AAH68547.1| 688|Homo sapiens SRPK2 protein protein. 36 0.25
BC035214-1|AAH35214.1| 688|Homo sapiens SFRS protein kinase 2 p... 36 0.25
AY354201-1|AAQ63886.1| 546|Homo sapiens SFRS protein kinase 2 i... 36 0.25
AC005070-2|AAC29140.1| 675|Homo sapiens serine kinase SRPK2 pro... 36 0.25
AC005070-1|AAC29141.1| 675|Homo sapiens WUGSC:H_RG152G17.1a pro... 36 0.25
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 35 0.44
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 35 0.44
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 35 0.44
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 35 0.44
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 35 0.44
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 35 0.44
BC009062-1|AAH09062.1| 198|Homo sapiens Unknown (protein for IM... 32 2.3
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 32 2.3
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 32 2.3
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 32 2.3
BC046248-1|AAH46248.1| 503|Homo sapiens similar to CG32656-PA p... 31 4.1
Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein. 31 5.4
EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein. 31 5.4
BC117303-1|AAI17304.1| 1021|Homo sapiens dynein heavy chain doma... 31 5.4
BC117301-1|AAI17302.1| 1021|Homo sapiens dynein heavy chain doma... 31 5.4
BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium p... 31 5.4
AK222829-1|BAD96549.1| 437|Homo sapiens trans-golgi network pro... 31 5.4
AK057314-1|BAB71423.1| 1021|Homo sapiens protein ( Homo sapiens ... 31 5.4
Y12434-1|CAC79625.2| 608|Homo sapiens UDP-GalNAc:polypeptide N-... 31 7.1
BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein. 31 7.1
BC045660-1|AAH45660.1| 401|Homo sapiens HP1BP3 protein protein. 31 7.1
AL833978-1|CAD38822.1| 401|Homo sapiens hypothetical protein pr... 31 7.1
AL663074-4|CAI23389.1| 553|Homo sapiens heterochromatin protein... 31 7.1
AL663074-3|CAI23388.1| 515|Homo sapiens heterochromatin protein... 31 7.1
AL663074-1|CAI23387.1| 401|Homo sapiens heterochromatin protein... 31 7.1
AL606477-6|CAI12533.1| 553|Homo sapiens heterochromatin protein... 31 7.1
AL606477-3|CAI12530.1| 515|Homo sapiens heterochromatin protein... 31 7.1
AL606477-1|CAI12528.1| 401|Homo sapiens heterochromatin protein... 31 7.1
AK026056-1|BAB15338.1| 379|Homo sapiens protein ( Homo sapiens ... 31 7.1
AK025287-1|BAB15105.1| 608|Homo sapiens protein ( Homo sapiens ... 31 7.1
AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein. 31 7.1
AF113534-1|AAF14871.1| 554|Homo sapiens HP1-BP74 protein protein. 31 7.1
AC006017-2|AAD45821.1| 608|Homo sapiens WUGSC:H_DJ0981O07.2 pro... 31 7.1
AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein. 31 7.1
>D63875-1|BAA09925.2| 1195|Homo sapiens KIAA0155 protein.
Length = 1195
Score = 36.3 bits (80), Expect = 0.14
Identities = 19/81 (23%), Positives = 34/81 (41%)
Frame = -3
Query: 671 PGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPME 492
P RP+ D+ S +DQ R + PS ++ ++Q + S R +P+
Sbjct: 1095 PRRPRRQRSDQDSDSDQPSRKRRPSGSEQSDNESVQSGRSHSGVSENDSRPASPSAESDH 1154
Query: 491 PIEEKEPTDAEGRASGTPTDP 429
E + G+ SG ++P
Sbjct: 1155 ESERGSDNEGSGQGSGNESEP 1175
>BC058914-1|AAH58914.1| 1173|Homo sapiens Ctr9, Paf1/RNA polymerase II
complex component, homolog (S. cerevisiae) protein.
Length = 1173
Score = 36.3 bits (80), Expect = 0.14
Identities = 19/81 (23%), Positives = 34/81 (41%)
Frame = -3
Query: 671 PGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPME 492
P RP+ D+ S +DQ R + PS ++ ++Q + S R +P+
Sbjct: 1073 PRRPRRQRSDQDSDSDQPSRKRRPSGSEQSDNESVQSGRSHSGVSENDSRPASPSAESDH 1132
Query: 491 PIEEKEPTDAEGRASGTPTDP 429
E + G+ SG ++P
Sbjct: 1133 ESERGSDNEGSGQGSGNESEP 1153
>U88666-1|AAC05299.1| 686|Homo sapiens serine kinase SRPK2 protein.
Length = 686
Score = 35.5 bits (78), Expect = 0.25
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Frame = -3
Query: 821 PEPDRLHYEKELAKFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFA------KLKPGRP 660
P P+ + ++ A+ + Y Y + F+G+L + +PE Q P F+ L+P
Sbjct: 408 PNPEEYNLDEPNAESDYTYSSSY-EQFNGELPNGRHKIPESQFPEFSTSLFSGSLEPVAC 466
Query: 659 KNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEP 489
++ + S +Q E S S +++TVS + L +++R AD + P++P
Sbjct: 467 GSVLSEGSPLTEQEESSPSHDRSRTVSASSTGDLP-----KAKTRAADL-LVNPLDP 517
>BC068547-1|AAH68547.1| 688|Homo sapiens SRPK2 protein protein.
Length = 688
Score = 35.5 bits (78), Expect = 0.25
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Frame = -3
Query: 821 PEPDRLHYEKELAKFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFA------KLKPGRP 660
P P+ + ++ A+ + Y Y + F+G+L + +PE Q P F+ L+P
Sbjct: 409 PNPEEYNLDEPNAESDYTYSSSY-EQFNGELPNGRHKIPESQFPEFSTSLFSGSLEPVAC 467
Query: 659 KNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEP 489
++ + S +Q E S S +++TVS + L +++R AD + P++P
Sbjct: 468 GSVLSEGSPLTEQEESSPSHDRSRTVSASSTGDLP-----KAKTRAADL-LVNPLDP 518
>BC035214-1|AAH35214.1| 688|Homo sapiens SFRS protein kinase 2
protein.
Length = 688
Score = 35.5 bits (78), Expect = 0.25
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Frame = -3
Query: 821 PEPDRLHYEKELAKFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFA------KLKPGRP 660
P P+ + ++ A+ + Y Y + F+G+L + +PE Q P F+ L+P
Sbjct: 409 PNPEEYNLDEPNAESDYTYSSSY-EQFNGELPNGRHKIPESQFPEFSTSLFSGSLEPVAC 467
Query: 659 KNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEP 489
++ + S +Q E S S +++TVS + L +++R AD + P++P
Sbjct: 468 GSVLSEGSPLTEQEESSPSHDRSRTVSASSTGDLP-----KAKTRAADL-LVNPLDP 518
>AY354201-1|AAQ63886.1| 546|Homo sapiens SFRS protein kinase 2
isoform c protein.
Length = 546
Score = 35.5 bits (78), Expect = 0.25
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Frame = -3
Query: 821 PEPDRLHYEKELAKFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFA------KLKPGRP 660
P P+ + ++ A+ + Y Y + F+G+L + +PE Q P F+ L+P
Sbjct: 409 PNPEEYNLDEPNAESDYTYSSSY-EQFNGELPNGRHKIPESQFPEFSTSLFSGSLEPVAC 467
Query: 659 KNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEP 489
++ + S +Q E S S +++TVS + L +++R AD + P++P
Sbjct: 468 GSVLSEGSPLTEQEESSPSHDRSRTVSASSTGDLP-----KAKTRAADL-LVNPLDP 518
>AC005070-2|AAC29140.1| 675|Homo sapiens serine kinase SRPK2
protein.
Length = 675
Score = 35.5 bits (78), Expect = 0.25
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Frame = -3
Query: 821 PEPDRLHYEKELAKFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFA------KLKPGRP 660
P P+ + ++ A+ + Y Y + F+G+L + +PE Q P F+ L+P
Sbjct: 396 PNPEEYNLDEPNAESDYTYSSSY-EQFNGELPNGRHKIPESQFPEFSTSLFSGSLEPVAC 454
Query: 659 KNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEP 489
++ + S +Q E S S +++TVS + L +++R AD + P++P
Sbjct: 455 GSVLSEGSPLTEQEESSPSHDRSRTVSASSTGDLP-----KAKTRAADL-LVNPLDP 505
>AC005070-1|AAC29141.1| 675|Homo sapiens WUGSC:H_RG152G17.1a
protein.
Length = 675
Score = 35.5 bits (78), Expect = 0.25
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Frame = -3
Query: 821 PEPDRLHYEKELAKFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFA------KLKPGRP 660
P P+ + ++ A+ + Y Y + F+G+L + +PE Q P F+ L+P
Sbjct: 396 PNPEEYNLDEPNAESDYTYSSSY-EQFNGELPNGRHKIPESQFPEFSTSLFSGSLEPVAC 454
Query: 659 KNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEP 489
++ + S +Q E S S +++TVS + L +++R AD + P++P
Sbjct: 455 GSVLSEGSPLTEQEESSPSHDRSRTVSASSTGDLP-----KAKTRAADL-LVNPLDP 505
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 34.7 bits (76), Expect = 0.44
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Frame = -3
Query: 734 KLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQ-- 561
K +++ + + + K + K +++ SS ++RERS+SP + K+ S ++
Sbjct: 128 KEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSS 187
Query: 560 --LEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESK 387
+ R SRS R T + P E+KE T S +P + T+ S
Sbjct: 188 PVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATS----TSD 243
Query: 386 HLRTPRHSP 360
L+ P+ P
Sbjct: 244 ILKVPKPEP 252
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 34.7 bits (76), Expect = 0.44
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Frame = -3
Query: 734 KLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQ-- 561
K +++ + + + K + K +++ SS ++RERS+SP + K+ S ++
Sbjct: 128 KEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSS 187
Query: 560 --LEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESK 387
+ R SRS R T + P E+KE T S +P + T+ S
Sbjct: 188 PVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATS----TSD 243
Query: 386 HLRTPRHSP 360
L+ P+ P
Sbjct: 244 ILKVPKPEP 252
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 34.7 bits (76), Expect = 0.44
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Frame = -3
Query: 734 KLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQ-- 561
K +++ + + + K + K +++ SS ++RERS+SP + K+ S ++
Sbjct: 128 KEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSS 187
Query: 560 --LEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESK 387
+ R SRS R T + P E+KE T S +P + T+ S
Sbjct: 188 PVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATS----TSD 243
Query: 386 HLRTPRHSP 360
L+ P+ P
Sbjct: 244 ILKVPKPEP 252
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 34.7 bits (76), Expect = 0.44
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Frame = -3
Query: 734 KLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQ-- 561
K +++ + + + K + K +++ SS ++RERS+SP + K+ S ++
Sbjct: 128 KEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSS 187
Query: 560 --LEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESK 387
+ R SRS R T + P E+KE T S +P + T+ S
Sbjct: 188 PVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATS----TSD 243
Query: 386 HLRTPRHSP 360
L+ P+ P
Sbjct: 244 ILKVPKPEP 252
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 34.7 bits (76), Expect = 0.44
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Frame = -3
Query: 734 KLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQ-- 561
K +++ + + + K + K +++ SS ++RERS+SP + K+ S ++
Sbjct: 128 KEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSS 187
Query: 560 --LEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESK 387
+ R SRS R T + P E+KE T S +P + T+ S
Sbjct: 188 PVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATS----TSD 243
Query: 386 HLRTPRHSP 360
L+ P+ P
Sbjct: 244 ILKVPKPEP 252
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 34.7 bits (76), Expect = 0.44
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Frame = -3
Query: 734 KLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQ-- 561
K +++ + + + K + K +++ SS ++RERS+SP + K+ S ++
Sbjct: 128 KEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSS 187
Query: 560 --LEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESK 387
+ R SRS R T + P E+KE T S +P + T+ S
Sbjct: 188 PVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATS----TSD 243
Query: 386 HLRTPRHSP 360
L+ P+ P
Sbjct: 244 ILKVPKPEP 252
>BC009062-1|AAH09062.1| 198|Homo sapiens Unknown (protein for
IMAGE:3875076) protein.
Length = 198
Score = 32.3 bits (70), Expect = 2.3
Identities = 33/102 (32%), Positives = 43/102 (42%)
Frame = -3
Query: 734 KLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLE 555
K +VRE PEP TP AK K R + SSS+ S S S + + S+ +
Sbjct: 33 KEAVREGRPPEP-TP--AKRK--RRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 87
Query: 554 DYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDP 429
SS S P P +P K+P E R S +P P
Sbjct: 88 SSSSSSSPSPAKPGPQALP-KPASPKKPPPGE-RRSRSPRKP 127
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 32.3 bits (70), Expect = 2.3
Identities = 33/102 (32%), Positives = 43/102 (42%)
Frame = -3
Query: 734 KLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLE 555
K +VRE PEP TP AK K R + SSS+ S S S + + S+ +
Sbjct: 2587 KEAVREGRPPEP-TP--AKRK--RRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2641
Query: 554 DYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDP 429
SS S P P +P K+P E R S +P P
Sbjct: 2642 SSSSSSSPSPAKPGPQALP-KPASPKKPPPGE-RRSRSPRKP 2681
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.3
Identities = 33/102 (32%), Positives = 43/102 (42%)
Frame = -3
Query: 734 KLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLE 555
K +VRE PEP TP AK K R + SSS+ S S S + + S+ +
Sbjct: 1110 KEAVREGRPPEP-TP--AKRK--RRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 1164
Query: 554 DYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDP 429
SS S P P +P K+P E R S +P P
Sbjct: 1165 SSSSSSSPSPAKPGPQALP-KPASPKKPPPGE-RRSRSPRKP 1204
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 32.3 bits (70), Expect = 2.3
Identities = 33/102 (32%), Positives = 43/102 (42%)
Frame = -3
Query: 734 KLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLE 555
K +VRE PEP TP AK K R + SSS+ S S S + + S+ +
Sbjct: 2635 KEAVREGRPPEP-TP--AKRK--RRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2689
Query: 554 DYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDP 429
SS S P P +P K+P E R S +P P
Sbjct: 2690 SSSSSSSPSPAKPGPQALP-KPASPKKPPPGE-RRSRSPRKP 2729
>BC046248-1|AAH46248.1| 503|Homo sapiens similar to CG32656-PA
protein.
Length = 503
Score = 31.5 bits (68), Expect = 4.1
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Frame = -3
Query: 644 DESSSNDQRERSKSPSKAKTVS----TPTLQQLEDYLRGSSRS-RRADTPAIFPMEPIEE 480
DESSS+ S SPS++ +S +P L S S R A P + + P+
Sbjct: 426 DESSSSSYASNSSSPSRSPGLSPSSPSPEFLGLRSISTPSPESLRYALMPEFYALSPVPP 485
Query: 479 KEPTDAEGRA-SGTPTDP 429
+E + E A TP +P
Sbjct: 486 EEQAEIESTAHPATPPEP 503
>Y00067-1|CAA68276.1| 916|Homo sapiens NF-M protein.
Length = 916
Score = 31.1 bits (67), Expect = 5.4
Identities = 24/116 (20%), Positives = 46/116 (39%)
Frame = -3
Query: 707 PEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRS 528
P P++PV K K PK+ +++ S + + K+ +P ++ + + S
Sbjct: 616 PVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVE 675
Query: 527 RRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESKHLRTPRHSP 360
+A +P P P+EE + G+ + V+ K K P+ P
Sbjct: 676 EKAKSPV--PKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVP 729
>EF560736-1|ABQ59046.1| 916|Homo sapiens NEFM protein protein.
Length = 916
Score = 31.1 bits (67), Expect = 5.4
Identities = 24/116 (20%), Positives = 46/116 (39%)
Frame = -3
Query: 707 PEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRS 528
P P++PV K K PK+ +++ S + + K+ +P ++ + + S
Sbjct: 616 PVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVE 675
Query: 527 RRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESKHLRTPRHSP 360
+A +P P P+EE + G+ + V+ K K P+ P
Sbjct: 676 EKAKSPV--PKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVP 729
>BC117303-1|AAI17304.1| 1021|Homo sapiens dynein heavy chain domain
1 protein.
Length = 1021
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 359 LDCVLASVNAYFPAISSPCIARSQDLWVFLKPSPRRLLAPFPRWAPW 499
LDC+L + P S C A + LW P P R AP PW
Sbjct: 771 LDCLLQQLKGAPPCPSRRCAAVAHALWTGRLPLPWRPHAPAGPQPPW 817
>BC117301-1|AAI17302.1| 1021|Homo sapiens dynein heavy chain domain
1 protein.
Length = 1021
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 359 LDCVLASVNAYFPAISSPCIARSQDLWVFLKPSPRRLLAPFPRWAPW 499
LDC+L + P S C A + LW P P R AP PW
Sbjct: 771 LDCLLQQLKGAPPCPSRRCAAVAHALWTGRLPLPWRPHAPAGPQPPW 817
>BC096757-1|AAH96757.1| 916|Homo sapiens neurofilament, medium
polypeptide 150kDa protein.
Length = 916
Score = 31.1 bits (67), Expect = 5.4
Identities = 24/116 (20%), Positives = 46/116 (39%)
Frame = -3
Query: 707 PEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRS 528
P P++PV K K PK+ +++ S + + K+ +P ++ + + S
Sbjct: 616 PVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVE 675
Query: 527 RRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESKHLRTPRHSP 360
+A +P P P+EE + G+ + V+ K K P+ P
Sbjct: 676 EKAKSPV--PKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVP 729
>AK222829-1|BAD96549.1| 437|Homo sapiens trans-golgi network
protein 2 variant protein.
Length = 437
Score = 31.1 bits (67), Expect = 5.4
Identities = 22/92 (23%), Positives = 36/92 (39%)
Frame = -3
Query: 707 PEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRS 528
PEPQTP + K G +D + + +++ S K+ + Q+ GS
Sbjct: 58 PEPQTPKDSPSKSGAEAQTPEDTPNKSGAEAKTQKDSSNKSGAEAKTQKGSTSKSGSEAQ 117
Query: 527 RRADTPAIFPMEPIEEKEPTDAEGRASGTPTD 432
D+ + E K+ T G + TP D
Sbjct: 118 TTKDSTSKSHPELQTPKDSTGKSGAEAQTPED 149
>AK057314-1|BAB71423.1| 1021|Homo sapiens protein ( Homo sapiens
cDNA FLJ32752 fis, clone TESTI2001661, weakly similar to
DYNEIN BETA CHAIN, FLAGELLAR OUTER ARM. ).
Length = 1021
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 359 LDCVLASVNAYFPAISSPCIARSQDLWVFLKPSPRRLLAPFPRWAPW 499
LDC+L + P S C A + LW P P R AP PW
Sbjct: 771 LDCLLQQLKGAPPCPSRRCAAVAHALWTGRLPLPWRPHAPAGPQPPW 817
>Y12434-1|CAC79625.2| 608|Homo sapiens UDP-GalNAc:polypeptide
N-acetylgalactosaminyltransferase protein.
Length = 608
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 782 KFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFAKLKPGRPKNL 651
K + F+ YLDN ++ + ++ +PQ P+F P RPK L
Sbjct: 438 KLGCKSFKWYLDNVYPEMQISGSHA-KPQQPIFVNRGPKRPKVL 480
>BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein.
Length = 1481
Score = 30.7 bits (66), Expect = 7.1
Identities = 18/84 (21%), Positives = 38/84 (45%)
Frame = -3
Query: 758 EYLDNFSGKLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVS 579
E D++ GK V ++ E ++ K K + + L + + ++P KTV
Sbjct: 156 EETDDY-GKAQVAKSSSKESRSSKLHKEKTRKERELKSGHKDRSKSHRKRETPKSYKTVD 214
Query: 578 TPTLQQLEDYLRGSSRSRRADTPA 507
+P + + + S S++ D+P+
Sbjct: 215 SPKRRSRSPHRKWSDSSKQDDSPS 238
>BC045660-1|AAH45660.1| 401|Homo sapiens HP1BP3 protein protein.
Length = 401
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = -3
Query: 743 FSGKLSVRENYLPEPQTPVFAKLKP--GRPKNLFDDESSSNDQRERSKSPSKAKTVSTPT 570
FSG + Y P P +F K +P R ++ +DESS D + P + TP
Sbjct: 253 FSGTFQLCFPYYPSPGV-LFPKKEPDDSRDEDEDEDESSEEDSEDEEPPPKRRLQKKTPA 311
Query: 569 L---QQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGT 441
+ RGS + + P+ +K P A+ A T
Sbjct: 312 KSPGKAASVKQRGSKPAPKVSAAQRGKARPLPKKAPPKAKTPAKKT 357
>AL833978-1|CAD38822.1| 401|Homo sapiens hypothetical protein
protein.
Length = 401
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = -3
Query: 743 FSGKLSVRENYLPEPQTPVFAKLKP--GRPKNLFDDESSSNDQRERSKSPSKAKTVSTPT 570
FSG + Y P P +F K +P R ++ +DESS D + P + TP
Sbjct: 253 FSGTFQLCFPYYPSPGV-LFPKKEPDDSRDEDEDEDESSEEDSEDEEPPPKRRLQKKTPA 311
Query: 569 L---QQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGT 441
+ RGS + + P+ +K P A+ A T
Sbjct: 312 KSPGKAASVKQRGSKPAPKVSAAQRGKARPLPKKAPPKAKTPAKKT 357
>AL663074-4|CAI23389.1| 553|Homo sapiens heterochromatin protein 1,
binding protein 3 protein.
Length = 553
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = -3
Query: 743 FSGKLSVRENYLPEPQTPVFAKLKP--GRPKNLFDDESSSNDQRERSKSPSKAKTVSTPT 570
FSG + Y P P +F K +P R ++ +DESS D + P + TP
Sbjct: 405 FSGTFQLCFPYYPSPGV-LFPKKEPDDSRDEDEDEDESSEEDSEDEEPPPKRRLQKKTPA 463
Query: 569 L---QQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGT 441
+ RGS + + P+ +K P A+ A T
Sbjct: 464 KSPGKAASVKQRGSKPAPKVSAAQRGKARPLPKKAPPKAKTPAKKT 509
>AL663074-3|CAI23388.1| 515|Homo sapiens heterochromatin protein 1,
binding protein 3 protein.
Length = 515
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = -3
Query: 743 FSGKLSVRENYLPEPQTPVFAKLKP--GRPKNLFDDESSSNDQRERSKSPSKAKTVSTPT 570
FSG + Y P P +F K +P R ++ +DESS D + P + TP
Sbjct: 367 FSGTFQLCFPYYPSPGV-LFPKKEPDDSRDEDEDEDESSEEDSEDEEPPPKRRLQKKTPA 425
Query: 569 L---QQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGT 441
+ RGS + + P+ +K P A+ A T
Sbjct: 426 KSPGKAASVKQRGSKPAPKVSAAQRGKARPLPKKAPPKAKTPAKKT 471
>AL663074-1|CAI23387.1| 401|Homo sapiens heterochromatin protein 1,
binding protein 3 protein.
Length = 401
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = -3
Query: 743 FSGKLSVRENYLPEPQTPVFAKLKP--GRPKNLFDDESSSNDQRERSKSPSKAKTVSTPT 570
FSG + Y P P +F K +P R ++ +DESS D + P + TP
Sbjct: 253 FSGTFQLCFPYYPSPGV-LFPKKEPDDSRDEDEDEDESSEEDSEDEEPPPKRRLQKKTPA 311
Query: 569 L---QQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGT 441
+ RGS + + P+ +K P A+ A T
Sbjct: 312 KSPGKAASVKQRGSKPAPKVSAAQRGKARPLPKKAPPKAKTPAKKT 357
>AL606477-6|CAI12533.1| 553|Homo sapiens heterochromatin protein 1,
binding protein 3 protein.
Length = 553
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = -3
Query: 743 FSGKLSVRENYLPEPQTPVFAKLKP--GRPKNLFDDESSSNDQRERSKSPSKAKTVSTPT 570
FSG + Y P P +F K +P R ++ +DESS D + P + TP
Sbjct: 405 FSGTFQLCFPYYPSPGV-LFPKKEPDDSRDEDEDEDESSEEDSEDEEPPPKRRLQKKTPA 463
Query: 569 L---QQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGT 441
+ RGS + + P+ +K P A+ A T
Sbjct: 464 KSPGKAASVKQRGSKPAPKVSAAQRGKARPLPKKAPPKAKTPAKKT 509
>AL606477-3|CAI12530.1| 515|Homo sapiens heterochromatin protein 1,
binding protein 3 protein.
Length = 515
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = -3
Query: 743 FSGKLSVRENYLPEPQTPVFAKLKP--GRPKNLFDDESSSNDQRERSKSPSKAKTVSTPT 570
FSG + Y P P +F K +P R ++ +DESS D + P + TP
Sbjct: 367 FSGTFQLCFPYYPSPGV-LFPKKEPDDSRDEDEDEDESSEEDSEDEEPPPKRRLQKKTPA 425
Query: 569 L---QQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGT 441
+ RGS + + P+ +K P A+ A T
Sbjct: 426 KSPGKAASVKQRGSKPAPKVSAAQRGKARPLPKKAPPKAKTPAKKT 471
>AL606477-1|CAI12528.1| 401|Homo sapiens heterochromatin protein 1,
binding protein 3 protein.
Length = 401
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = -3
Query: 743 FSGKLSVRENYLPEPQTPVFAKLKP--GRPKNLFDDESSSNDQRERSKSPSKAKTVSTPT 570
FSG + Y P P +F K +P R ++ +DESS D + P + TP
Sbjct: 253 FSGTFQLCFPYYPSPGV-LFPKKEPDDSRDEDEDEDESSEEDSEDEEPPPKRRLQKKTPA 311
Query: 569 L---QQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGT 441
+ RGS + + P+ +K P A+ A T
Sbjct: 312 KSPGKAASVKQRGSKPAPKVSAAQRGKARPLPKKAPPKAKTPAKKT 357
>AK026056-1|BAB15338.1| 379|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22403 fis, clone HRC08167. ).
Length = 379
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 782 KFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFAKLKPGRPKNL 651
K + F+ YLDN ++ + ++ +PQ P+F P RPK L
Sbjct: 209 KLGCKSFKWYLDNVYPEMQISGSHA-KPQQPIFVNRGPKRPKVL 251
>AK025287-1|BAB15105.1| 608|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21634 fis, clone COL08230. ).
Length = 608
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 782 KFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFAKLKPGRPKNL 651
K + F+ YLDN ++ + ++ +PQ P+F P RPK L
Sbjct: 438 KLGCKSFKWYLDNVYPEMQISGSHA-KPQQPIFVNRGPKRPKVL 480
>AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein.
Length = 1490
Score = 30.7 bits (66), Expect = 7.1
Identities = 18/84 (21%), Positives = 38/84 (45%)
Frame = -3
Query: 758 EYLDNFSGKLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVS 579
E D++ GK V ++ E ++ K K + + L + + ++P KTV
Sbjct: 156 EETDDY-GKAQVAKSSSKESRSSKLHKEKTRKERELKSGHKDRSKSHRKRETPKSYKTVD 214
Query: 578 TPTLQQLEDYLRGSSRSRRADTPA 507
+P + + + S S++ D+P+
Sbjct: 215 SPKRRSRSPHRKWSDSSKQDDSPS 238
>AF113534-1|AAF14871.1| 554|Homo sapiens HP1-BP74 protein protein.
Length = 554
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = -3
Query: 743 FSGKLSVRENYLPEPQTPVFAKLKP--GRPKNLFDDESSSNDQRERSKSPSKAKTVSTPT 570
FSG + Y P P +F K +P R ++ +DESS D + P + TP
Sbjct: 406 FSGTFQLCFPYYPSPGV-LFPKKEPDDSRDEDEDEDESSEEDSEDEEPPPKRRLQKKTPA 464
Query: 569 L---QQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGT 441
+ RGS + + P+ +K P A+ A T
Sbjct: 465 KSPGKAASVKQRGSKPAPKVSAAQRGKARPLPKKAPPKAKTPAKKT 510
>AC006017-2|AAD45821.1| 608|Homo sapiens WUGSC:H_DJ0981O07.2
protein.
Length = 608
Score = 30.7 bits (66), Expect = 7.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 782 KFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFAKLKPGRPKNL 651
K + F+ YLDN ++ + ++ +PQ P+F P RPK L
Sbjct: 438 KLGCKSFKWYLDNVYPEMQISGSHA-KPQQPIFVNRGPKRPKVL 480
>AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein.
Length = 1535
Score = 30.7 bits (66), Expect = 7.1
Identities = 18/84 (21%), Positives = 38/84 (45%)
Frame = -3
Query: 758 EYLDNFSGKLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVS 579
E D++ GK V ++ E ++ K K + + L + + ++P KTV
Sbjct: 210 EETDDY-GKAQVAKSSSKESRSSKLHKEKTRKERELKSGHKDRSKSHRKRETPKSYKTVD 268
Query: 578 TPTLQQLEDYLRGSSRSRRADTPA 507
+P + + + S S++ D+P+
Sbjct: 269 SPKRRSRSPHRKWSDSSKQDDSPS 292
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,377,047
Number of Sequences: 237096
Number of extensions: 2517713
Number of successful extensions: 7264
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 6659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7232
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -