Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16e12
(862 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical ... 35 0.065
Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical p... 34 0.11
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 34 0.11
U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical pr... 33 0.35
Z74026-2|CAD54122.1| 588|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 31 1.4
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 31 1.4
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z69716-4|CAA93528.1| 480|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical pr... 29 3.2
U58732-7|AAB00597.1| 345|Caenorhabditis elegans Taf (tbp-associ... 29 3.2
U50066-2|AAA93438.2| 202|Caenorhabditis elegans Hypothetical pr... 29 3.2
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 29 5.6
AF039051-4|AAB94264.1| 539|Caenorhabditis elegans Hypothetical ... 29 5.6
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom... 29 5.6
Z73899-3|CAA98075.1| 331|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z50872-4|CAA90757.2| 498|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical pr... 28 9.8
U00050-3|AAL02480.1| 556|Caenorhabditis elegans Hypothetical pr... 28 9.8
U00050-2|AAL02479.1| 582|Caenorhabditis elegans Hypothetical pr... 28 9.8
U00050-1|AAA50697.1| 583|Caenorhabditis elegans Hypothetical pr... 28 9.8
AF016657-6|AAB93659.1| 309|Caenorhabditis elegans Hypothetical ... 28 9.8
>AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical
protein ZC190.8 protein.
Length = 227
Score = 35.1 bits (77), Expect = 0.065
Identities = 37/146 (25%), Positives = 62/146 (42%)
Frame = -3
Query: 842 VRLSDPMPEPDRLHYEKELAKFNDRYFREYLDNFSGKLSVRENYLPEPQTPVFAKLKPGR 663
+ + DP P RL E ND+ R D ++S + N P P+TP LKP
Sbjct: 44 LHVKDP-PSDKRLSPESSKRNSNDQKARSVRDPSVKQISAQGNSPPLPKTPPVELLKPPP 102
Query: 662 PKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEPIE 483
+ + ++S RE+S + + AK S +Q +L S ++ + +
Sbjct: 103 FELQKEFKNSHRSVREKSGNKTHAKESSRHRYRQF-PHLDNSHQTEFKKSHR--SIREKS 159
Query: 482 EKEPTDAEGRASGTPTDPGYVQYTAK 405
++ TD+ G+PT+ Y T K
Sbjct: 160 NRKSTDSSTEL-GSPTNSQYSTTTRK 184
>Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical
protein C25A1.10b protein.
Length = 696
Score = 34.3 bits (75), Expect = 0.11
Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Frame = -3
Query: 707 PEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRS 528
P +TP A KP K SS+D++ +KS + AKT PT ++ SS
Sbjct: 292 PAKKTPAKAAPKPA-SKKAESSSDSSDDEKPAAKS-TPAKTTPKPTAKKAASSSSDSSDD 349
Query: 527 RR----ADTPAIFPMEPIEEK-----EPTDAEGRASGTPTDPGYVQYTAKRWPESKHLRT 375
+ T A +P +K + +D E A TP P V+ AK+ S
Sbjct: 350 EKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPVKPTPVKIVAKKVDSSSDSSD 409
Query: 374 PRHSPT 357
PT
Sbjct: 410 DEKKPT 415
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 34.3 bits (75), Expect = 0.11
Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Frame = -3
Query: 707 PEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRS 528
P +TP A KP K SS+D++ +KS + AKT PT ++ SS
Sbjct: 567 PAKKTPAKAAPKPA-SKKAESSSDSSDDEKPAAKS-TPAKTTPKPTAKKAASSSSDSSDD 624
Query: 527 RR----ADTPAIFPMEPIEEK-----EPTDAEGRASGTPTDPGYVQYTAKRWPESKHLRT 375
+ T A +P +K + +D E A TP P V+ AK+ S
Sbjct: 625 EKKPVAKPTSAKATPKPAAKKADSSSDSSDDEAPAKKTPVKPTPVKIVAKKVDSSSDSSD 684
Query: 374 PRHSPT 357
PT
Sbjct: 685 DEKKPT 690
Score = 28.3 bits (60), Expect = 7.4
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = -3
Query: 707 PEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRS 528
P +TP A KP K SS+D++ +KS + AK PT +++ SS
Sbjct: 445 PAKKTPAKAAPKPA-SKKAESSSDSSDDEKPAAKS-TPAKITPKPTAKKVASSSSDSSDD 502
Query: 527 RR----ADTPAIFPMEPIEEKEPTDAE 459
+ TPA +P+ +K + ++
Sbjct: 503 EKKPAAKPTPANATPKPVAKKAESSSD 529
>U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical
protein C53C9.2 protein.
Length = 397
Score = 32.7 bits (71), Expect = 0.35
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = -3
Query: 695 TPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRAD 516
TP +L+ G K +D ++ + E +K P A +V + + R SSR D
Sbjct: 275 TPRNTQLRAGWKKEWIEDYEAALKEWEETKPPGSASSVDPFGHYKKKFEERESSRQSEID 334
Query: 515 TPAIFPMEPIEEKEPTDAE 459
+ ++ EP+ E EP + E
Sbjct: 335 SQSVKASEPV-EPEPEEEE 352
>Z74026-2|CAD54122.1| 588|Caenorhabditis elegans Hypothetical
protein B0240.4 protein.
Length = 588
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -3
Query: 689 VFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQ 561
++ + PGR KN F SSS+ +SP+ +TVS+P +QQ
Sbjct: 17 LYNQFSPGRRKNDFPAASSSSSSPNLRRSPN--RTVSSPRVQQ 57
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/90 (25%), Positives = 38/90 (42%)
Frame = -3
Query: 701 PQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRR 522
P++P GRP++ D S+ R RS S ST Q+ +R S +
Sbjct: 510 PRSPTDVSHDSGRPRSPTDLSQSTKPSR-RSSSIRPRSPTST---SQMSTIVRSRSPTGA 565
Query: 521 ADTPAIFPMEPIEEKEPTDAEGRASGTPTD 432
+DT ++FP ++ G++ TD
Sbjct: 566 SDTSSLFPSRTRSPTLQSNTSGQSMERTTD 595
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/90 (25%), Positives = 38/90 (42%)
Frame = -3
Query: 701 PQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRR 522
P++P GRP++ D S+ R RS S ST Q+ +R S +
Sbjct: 510 PRSPTDVSHDSGRPRSPTDLSQSTKPSR-RSSSIRPRSPTST---SQMSTIVRSRSPTGA 565
Query: 521 ADTPAIFPMEPIEEKEPTDAEGRASGTPTD 432
+DT ++FP ++ G++ TD
Sbjct: 566 SDTSSLFPSRTRSPTLQSNTSGQSMERTTD 595
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = -3
Query: 611 SKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTD 432
SKSP A+ +P+ + R SRS+ PA P K P A RA
Sbjct: 311 SKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKS 370
Query: 431 P 429
P
Sbjct: 371 P 371
>Z69716-4|CAA93528.1| 480|Caenorhabditis elegans Hypothetical
protein C04B4.4 protein.
Length = 480
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 794 KELAKFNDRYFREYLDNFSGK 732
KELAKFND + EYL + K
Sbjct: 156 KELAKFNDHFLNEYLGSSDAK 176
>Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical
protein T13H5.4 protein.
Length = 500
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 848 NYVRLSDPMPEPDRLHYEKELAKFNDRYFREYLDNFSGKLSVRENY 711
N ++ D + ++L EKE+AK+N EY D+ SG + R+ Y
Sbjct: 447 NITKIKDALDLWNKLKTEKEMAKWNPDIDEEYEDS-SGNVVTRKMY 491
>U58732-7|AAB00597.1| 345|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 11.1
protein.
Length = 345
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -3
Query: 719 ENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRG 540
+ + PE + P ++ P RP DDE ++ R K+ S L++ E Y R
Sbjct: 200 QQHQPEEEAPGPSRPAPARPARKLDDE--EENELSRLKTQVLLSNFSQEQLERYESYRRS 257
Query: 539 S 537
S
Sbjct: 258 S 258
>U50066-2|AAA93438.2| 202|Caenorhabditis elegans Hypothetical
protein T14A8.2 protein.
Length = 202
Score = 29.5 bits (63), Expect = 3.2
Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 11/135 (8%)
Frame = -3
Query: 728 SVRENYLPEPQTPVF----AKLKPGRPKNL-FDDESSSN--DQRERSKSPSKAKTV---S 579
S+R P PQT A+L PG F++E+S D E S V S
Sbjct: 51 SLRHERAPGPQTEAIDGTTAELGPGDDTPAQFEEEASGEEEDHHEHHMEASGEAPVDSSS 110
Query: 578 TPTLQQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRW 399
T + E + ++ +TP + +EE +P +A S P + ++
Sbjct: 111 TAPMSSDEPKIEETTEETTEETPVLSKEPEVEESKPIEAATVVSAVEDQPSTSETSSSSS 170
Query: 398 PE-SKHLRTPRHSPT 357
E S TP S T
Sbjct: 171 EEPSTSSETPVSSAT 185
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 707 PEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSK--AKTVSTP 573
PE +TPV AK +P +PK+ + D + P K AK + P
Sbjct: 910 PEKKTPVLAKKEPEKPKDAPKVAAKPRDPSPKKAVPEKEPAKVAAKP 956
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
protein F26H11.2c protein.
Length = 2266
Score = 28.7 bits (61), Expect = 5.6
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = -3
Query: 740 SGKLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERS---KSPSKAKTVSTPT 570
SG S+ ++ P T + PK FDD S ++R+ ++PS A+ V
Sbjct: 72 SGNSSIADSEDPSESTSSSRPRRSRLPKRYFDDGYSPPPTKKRAAQRETPSDAEEVEV-- 129
Query: 569 LQQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDP 429
++E+ S RS A TPA K + A GR PT P
Sbjct: 130 --KIEEI---SVRSTPASTPA--------PKSTSKARGRPKKNPTPP 163
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
protein F26H11.2b protein.
Length = 1693
Score = 28.7 bits (61), Expect = 5.6
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = -3
Query: 740 SGKLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERS---KSPSKAKTVSTPT 570
SG S+ ++ P T + PK FDD S ++R+ ++PS A+ V
Sbjct: 72 SGNSSIADSEDPSESTSSSRPRRSRLPKRYFDDGYSPPPTKKRAAQRETPSDAEEVEV-- 129
Query: 569 LQQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDP 429
++E+ S RS A TPA K + A GR PT P
Sbjct: 130 --KIEEI---SVRSTPASTPA--------PKSTSKARGRPKKNPTPP 163
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
protein F26H11.2a protein.
Length = 1691
Score = 28.7 bits (61), Expect = 5.6
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Frame = -3
Query: 740 SGKLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERS---KSPSKAKTVSTPT 570
SG S+ ++ P T + PK FDD S ++R+ ++PS A+ V
Sbjct: 72 SGNSSIADSEDPSESTSSSRPRRSRLPKRYFDDGYSPPPTKKRAAQRETPSDAEEVEV-- 129
Query: 569 LQQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDP 429
++E+ S RS A TPA K + A GR PT P
Sbjct: 130 --KIEEI---SVRSTPASTPA--------PKSTSKARGRPKKNPTPP 163
>Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical
protein C05G5.2 protein.
Length = 685
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -3
Query: 674 KPGRPKNLFDDESSSNDQRERSKSPSK--AKTVSTPTLQQ 561
KP K+LF +S S+D +S S SK AKT S P +++
Sbjct: 473 KPVAKKSLFSSDSDSDDDFLKSFSKSKPVAKTESIPVVKK 512
>AF039051-4|AAB94264.1| 539|Caenorhabditis elegans Hypothetical
protein C14C6.6 protein.
Length = 539
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 701 PQTPVFAKLKPGR-PKNLFDDESSSNDQRERSKSPSKAKTVSTPTL 567
P T V A ++P PK D+ +++N E + P++ T++TP +
Sbjct: 31 PMTQV-AMIEPAMLPKEELDNSTTTNSSHELNTEPTEILTITTPII 75
>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
homolog) family protein 6 protein.
Length = 1186
Score = 28.7 bits (61), Expect = 5.6
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Frame = -3
Query: 662 PKNLFDDESS-SNDQRERSKSPSKAKTVSTPTLQQLEDYLR------GSSRSRRADTPAI 504
PK+L +D SND ++ S +KTVS+P R SS D
Sbjct: 33 PKSLKNDTPKISNDSEKKVLKRSNSKTVSSPVKTPRNASKRPKVVVCSSSEGEDDDGDED 92
Query: 503 FPMEPIEEKEPTDAEGRASGTPTDPGYVQYTAKRWPESKHLRTPR 369
F M+ EE E +D E A +D V+ PES TP+
Sbjct: 93 FEMKEAEEHESSD-ESEADENASDCEVVES-----PESTPQSTPK 131
>Z73899-3|CAA98075.1| 331|Caenorhabditis elegans Hypothetical
protein ZK829.5 protein.
Length = 331
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -3
Query: 551 YLRGSSRSRRADTPAIFPMEPIEEKEPTDAE----GRASGTPTDPGYVQYTAKRWPES 390
Y ++ +R+ PA P+E ++EKE +AE +P+ P Y+ P+S
Sbjct: 210 YEISGTKCQRSKRPAKLPVESLDEKELKNAEKGIMSLLESSPSSPSYLYQYQYNSPQS 267
>Z50872-4|CAA90757.2| 498|Caenorhabditis elegans Hypothetical
protein C05D12.1 protein.
Length = 498
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 416 IARSQDLWVFLKPSPRRLLAPFPRWAPWGISPAYQPYATSTIL 544
+A Q ++ FL+PSP + P W W + A++TI+
Sbjct: 339 LALLQPVFGFLRPSPTSSIRPIFNWGHWLVGMFSWSVASATIV 381
>Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical
protein F13B12.1 protein.
Length = 511
Score = 27.9 bits (59), Expect = 9.8
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = -3
Query: 683 AKLKPGRPKNLFDDESSSNDQRERSKSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAI 504
A P R + S+++ RS SPS KT S + ED S ++RA
Sbjct: 55 APASPARDSSAPASPSAASPAGSRSPSPSPVKTKSKVMIDSDEDSDAEESANKRA----- 109
Query: 503 FPMEPIEEKEPTDAEG--RASGTPTDPGYVQYTAKRWPESKHL 381
+ + + +DAEG R +D + T+K+ P +K+L
Sbjct: 110 -----LIDSDASDAEGKKRRVMLDSDDSDHEGTSKKEPTTKNL 147
>U00050-3|AAL02480.1| 556|Caenorhabditis elegans Hypothetical
protein F09F7.5c protein.
Length = 556
Score = 27.9 bits (59), Expect = 9.8
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Frame = -3
Query: 842 VRLSDPMPEPDRLHYEKELAKF--NDRYFREYLDNFSGKLSVRENY-LPEPQTPVFAKLK 672
V L D P + E E+ + N +Y+ N + ++NY P P TP K
Sbjct: 81 VGLDDAFPSASKSEEEVEVVRGYENQPTSHQYI-NIAPPRPSKKNYKAPAPPTPPPQNSK 139
Query: 671 PGRPKNLFDDESSSNDQRERS---KSPSKAKTVST 576
P N DDE +++ E+ +S S +ST
Sbjct: 140 PNLIFNAQDDEEETSEISEQPVVFRSISHTSNIST 174
>U00050-2|AAL02479.1| 582|Caenorhabditis elegans Hypothetical
protein F09F7.5b protein.
Length = 582
Score = 27.9 bits (59), Expect = 9.8
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Frame = -3
Query: 842 VRLSDPMPEPDRLHYEKELAKF--NDRYFREYLDNFSGKLSVRENY-LPEPQTPVFAKLK 672
V L D P + E E+ + N +Y+ N + ++NY P P TP K
Sbjct: 80 VGLDDAFPSASKSEEEVEVVRGYENQPTSHQYI-NIAPPRPSKKNYKAPAPPTPPPQNSK 138
Query: 671 PGRPKNLFDDESSSNDQRERS---KSPSKAKTVST 576
P N DDE +++ E+ +S S +ST
Sbjct: 139 PNLIFNAQDDEEETSEISEQPVVFRSISHTSNIST 173
>U00050-1|AAA50697.1| 583|Caenorhabditis elegans Hypothetical
protein F09F7.5a protein.
Length = 583
Score = 27.9 bits (59), Expect = 9.8
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Frame = -3
Query: 842 VRLSDPMPEPDRLHYEKELAKF--NDRYFREYLDNFSGKLSVRENY-LPEPQTPVFAKLK 672
V L D P + E E+ + N +Y+ N + ++NY P P TP K
Sbjct: 81 VGLDDAFPSASKSEEEVEVVRGYENQPTSHQYI-NIAPPRPSKKNYKAPAPPTPPPQNSK 139
Query: 671 PGRPKNLFDDESSSNDQRERS---KSPSKAKTVST 576
P N DDE +++ E+ +S S +ST
Sbjct: 140 PNLIFNAQDDEEETSEISEQPVVFRSISHTSNIST 174
>AF016657-6|AAB93659.1| 309|Caenorhabditis elegans Hypothetical
protein C16C4.15 protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = -3
Query: 764 FREYLDNFSGKLSVRENYLPEPQTPVFAKLKPGRPKNLFDDESSSNDQRERSKSPSKAKT 585
F E + F + ENY+ + + A+ K + DD SS + + E SKS S++ T
Sbjct: 230 FCEGFEKFMRWNIMEENYIVKDSIIIEARGKITKMIGCDDDSSSDDGEDESSKSHSESDT 289
Query: 584 VS 579
S
Sbjct: 290 SS 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,417,791
Number of Sequences: 27780
Number of extensions: 407945
Number of successful extensions: 1387
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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