Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16e12
(862 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 24 1.6
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 24 2.1
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 23 2.7
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 23 4.8
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 23 4.8
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 22 6.3
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 22 6.3
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 22 6.3
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 22 6.3
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 6.3
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 24.2 bits (50), Expect = 1.6
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Frame = -3
Query: 608 KSPSKAKTVSTPTLQQLEDYLRGSSRSRRADTPAIFPMEPIEEKEPTDAEGRASGTPTDP 429
K+ S + V +P +E + S S + E + +EP D TP D
Sbjct: 280 KTHSDSSVVGSPRDSPIEPEIEISQNSVSTGSDK----ENHKTEEPNDEVATYDNTPRDF 335
Query: 428 GYVQYTAKRWPESKHL-----RTPRHSPT*PL*GSTIFDYPPVFDNF 303
Y Y+ +++ +S HL R + +PT + +F YP V +
Sbjct: 336 PYYMYSREQYSQS-HLISNENRDFQTTPTVSVEQPHLFLYPEVSSTY 381
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -3
Query: 662 PKNLFDDESSSNDQRERSKSPSKAKTVSTP 573
P + +S N Q+ PS+ T STP
Sbjct: 1279 PTTITSSQSPGNQQQTIQTQPSRNNTYSTP 1308
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.4 bits (48), Expect = 2.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 644 DESSSNDQRERSKSPSKAKTVSTPTLQQLEDY 549
+ S +RERSK P ++S T+ +Y
Sbjct: 287 ERSRDRMERERSKEPKIISSLSNKTIHNNNNY 318
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.6 bits (46), Expect = 4.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 808 DCTTRRSWQSSTTDISGNI*TIFQGNCQLERTIYPN 701
DC R+SW+ S G I ++ LER P+
Sbjct: 86 DCYFRQSWRDSRLSFLGPIKSLSLSIKMLERIWRPD 121
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 22.6 bits (46), Expect = 4.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 533 RSRRADTPAIFPMEPIEEKEPTDAEGRASGTPT 435
R R+ D+P+ +E EK A AS PT
Sbjct: 570 RFRKLDSPSDSGIESGTEKPDKPASSSASSAPT 602
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 644 DESSSNDQRERSKSPSKAKTVSTPTL 567
+ S +RERSK P ++S T+
Sbjct: 65 ERSRDRKERERSKEPKIISSLSNKTI 90
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 644 DESSSNDQRERSKSPSKAKTVSTPTL 567
+ S +RERSK P ++S T+
Sbjct: 65 ERSRDRKERERSKEPKIISSLSNKTI 90
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 644 DESSSNDQRERSKSPSKAKTVSTPTL 567
+ S +RERSK P ++S T+
Sbjct: 65 ERSRDRKERERSKEPKIISSLSNKTI 90
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 644 DESSSNDQRERSKSPSKAKTVSTPTL 567
+ S +RERSK P ++S T+
Sbjct: 65 ERSRDRKERERSKEPKIISSLSNKTI 90
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 22.2 bits (45), Expect = 6.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 644 DESSSNDQRERSKSPSKAKTVSTPTL 567
+ S +RERSK P ++S T+
Sbjct: 298 ERSRDRKERERSKEPKIISSLSNKTI 323
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,567
Number of Sequences: 438
Number of extensions: 5859
Number of successful extensions: 46
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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