Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e09
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    77   4e-15
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    36   0.006
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    28   1.6  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   2.8  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.6  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   8.7  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   8.7  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
 Frame = -3

Query: 717 ITFMKSPKDDEKISLLHNCKALVYTPSNEHFGIVPLEAMYFCKPVIAVNNGGPTETVVNE 538
           + F+ S     + +L+ + + L+YTP NEHFGIVPLEAM    PV+A  NGGP ETV++ 
Sbjct: 313 VLFLLSVPSKVRDALISSSRILLYTPENEHFGIVPLEAMLRKVPVLAQTNGGPLETVIDG 372

Query: 537 VTGFLCEPNSKSFATAMSKLVLNPDL-IERFGQAGLKRFETNFSFDAFTEQLDG-ILTRE 364
             G+L   ++K +   + +   +        G+AG +  +  FS DA   + +  I++  
Sbjct: 373 KNGWLRPRDAKIWGNVIYEATTSTTYDTAAMGEAGSEWVKNEFSTDAMARKFESEIMSGI 432

Query: 363 RQIVSEAR 340
           R I  E R
Sbjct: 433 RSITPEKR 440


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
 Frame = -3

Query: 744 AAELEIDDKITFMKSPKDDEKISLLHNCKALVYTPSNEHFGIVPLEAMYFCKPVIAVNNG 565
           A EL +  K+ F+      + +  L  C   V    NEHFGI  +E M      +  N+G
Sbjct: 334 ATELNLQSKVKFVVDAPWPKVVEYLGTCSIGVNYMWNEHFGIGVVEYMAAGLIPVVNNSG 393

Query: 564 GPTETVV----NEVTGFLCEPNSKSFATAMSK-LVLNP 466
           GP   +V     + TGF     S+ +A A  K L L+P
Sbjct: 394 GPKFDIVIPWIGKPTGFHASTISE-YAEAYHKALTLSP 430


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +2

Query: 386 NCSVNASKEKFVSNLLSPA*PNLSIRSGFKTNLLIAVANDLLFGSHKKPVTSLTTVSVGP 565
           N S   SK+  +SN          +  GF T+    V++    GS   P  S +T+  G 
Sbjct: 35  NLSKEVSKDILLSNYAFTG-VRADVTKGFCTSPWFTVSHAFALGSQVLPPYSFSTMFGGE 93

Query: 566 PLF 574
           PLF
Sbjct: 94  PLF 96


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 537 VTGFLCEPNSKSFATAMSKLV-LNPDLIERFGQAGLKRFETNF 412
           VT FL + +SKS    +     + P +I  FG+ GL  FE+ F
Sbjct: 194 VTAFLLDLSSKSLGKGIRLFERVKPSMIMPFGKRGLLVFESLF 236


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +2

Query: 251 TLFIHSHTMSNIVGVFAFCYFFFLSSYSTPRASETICLSLVKIPSNCSVNASKEKFVSNL 430
           T+  HS T      + +    F L +  TP A   +  S+ + P+N S  A   +   + 
Sbjct: 235 TVGSHSFTSGTHPPIVSSNSAFTLPNAVTPAAQAPLIRSVSEYPANVSPPAQSLQLPKST 294

Query: 431 LSPA*PNLSIRS 466
            +PA  +LSI S
Sbjct: 295 SNPADLHLSIAS 306


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 222 FTTFELYNNLLCSYTLIQCQTLLECLHFVIFSSSL--HIQRLEPQRLFVFLLL 374
           FT  +L ++L+        + LL  L F  F+S    H+  L+P R+FV  LL
Sbjct: 633 FTAIDLLDSLIPDIIAADNKPLL-ALAFHAFASLQIKHLDLLQPSRMFVIQLL 684


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 317 FLSSYST-PRASETICLSLVKIPSNCSVNASKEKFVSNLLS 436
           FLSS +   + SE++CL     P   +V  + EK+  ++ S
Sbjct: 24  FLSSQADLKKYSESLCLPKTSFPIKPNVKGNNEKYFKSITS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,819
Number of Sequences: 5004
Number of extensions: 59446
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)