Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16e09
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0966 + 29776340-29776433,29776581-29776682,29777038-297771... 113 1e-25
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 49 5e-06
07_03_1274 + 25377018-25377127,25377673-25377802,25377898-253780... 48 1e-05
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 46 3e-05
04_03_0297 + 14060687-14060787,14061341-14061473,14061566-140617... 43 3e-04
04_03_0029 - 9714031-9714072,9714196-9714219,9714343-9714406,971... 43 3e-04
06_03_0908 - 25858909-25859185,25859765-25859892,25860061-258607... 42 5e-04
12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397... 42 7e-04
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 41 0.001
02_01_0627 + 4708648-4708836,4708975-4709064,4709579-4709664,471... 41 0.001
06_01_0661 - 4807712-4807759,4807857-4807995,4808107-4808351,480... 41 0.001
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939... 40 0.003
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 36 0.026
01_01_1120 - 8884760-8885017,8886088-8886150,8887365-8887627,888... 36 0.026
03_02_0948 - 12645972-12646010,12646612-12646750,12646846-126470... 36 0.034
07_01_0160 + 1126674-1126937,1128442-1129998 30 1.7
07_01_0003 + 16711-17016,17107-17177,17269-17461,17929-17984,185... 30 2.2
09_02_0306 + 7126178-7127398 29 5.2
06_01_0230 + 1765913-1766251,1766365-1766445,1766553-1766651,176... 29 5.2
05_07_0253 + 28692309-28692643,28693530-28693569,28693709-286937... 29 5.2
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 28 6.9
02_01_0612 - 4573595-4573699,4574153-4574200,4574653-4575693,457... 28 6.9
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 28 9.1
01_01_0019 + 141084-141631,142191-142431,142563-142680,142749-14... 28 9.1
>04_04_0966 +
29776340-29776433,29776581-29776682,29777038-29777154,
29777428-29777621,29777702-29777807,29777908-29778055,
29778201-29778337,29778436-29778602,29778681-29778974
Length = 452
Score = 113 bits (273), Expect = 1e-25
Identities = 56/121 (46%), Positives = 75/121 (61%)
Frame = -3
Query: 744 AAELEIDDKITFMKSPKDDEKISLLHNCKALVYTPSNEHFGIVPLEAMYFCKPVIAVNNG 565
AA + + + F+ S E+ LL NC ++YTP +EHFGIVPLEAM KPVIA N+G
Sbjct: 320 AASEGVSEHVKFVTSCSTSERNELLSNCLCVLYTPKDEHFGIVPLEAMAAYKPVIACNSG 379
Query: 564 GPTETVVNEVTGFLCEPNSKSFATAMSKLVLNPDLIERFGQAGLKRFETNFSFDAFTEQL 385
GP ETV+N+ TGFLCEP++ F+ AM KLV + DL + G+ FS F + L
Sbjct: 380 GPVETVINDETGFLCEPSAPEFSKAMLKLVNDHDLAVKMGKQARGHVVQKFSTKTFGDLL 439
Query: 384 D 382
+
Sbjct: 440 N 440
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 48.8 bits (111), Expect = 5e-06
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = -3
Query: 657 ALVYTPSNEHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGFLCEPNSKSFATAM--- 487
A V E FG+ +E+M P A GGP E +VN V+GF +P A+A+
Sbjct: 670 AFVQPAFYEAFGLTVVESMTCGLPTFATAYGGPAEIIVNGVSGFHIDPYQGDKASALLVE 729
Query: 486 --SKLVLNPDLIERFGQAGLKRFETNFSFDAFTEQL 385
K +P + Q GL+R E +++ ++E+L
Sbjct: 730 FFEKCQEDPSHWTKISQGGLQRIEEKYTWKLYSERL 765
>07_03_1274 +
25377018-25377127,25377673-25377802,25377898-25378049,
25378135-25378327,25378505-25378623,25378711-25378927,
25379038-25379133,25379249-25379422,25379530-25379646,
25379742-25379908,25379987-25380211,25380299-25380617,
25380703-25380947,25381042-25381180,25381277-25381324
Length = 816
Score = 47.6 bits (108), Expect = 1e-05
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = -3
Query: 657 ALVYTPSNEHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGFLCEPNSKSFATAM--- 487
A V E FG+ +EAM P A GGP E +V+ V+G+ +P A+A+
Sbjct: 670 AFVQPALYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVHGVSGYHIDPYQNDKASALLVE 729
Query: 486 --SKLVLNPDLIERFGQAGLKRFETNFSFDAFTEQL 385
K +P+ + Q GL+R E +++ ++E+L
Sbjct: 730 FFEKCQEDPNHWIKISQGGLQRIEEKYTWKLYSERL 765
>02_05_1336 + 35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 46.0 bits (104), Expect = 3e-05
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Frame = -3
Query: 720 KITFMKSPKDDEKISLLHNC-----KALVYTPSNEHFGIVPLEAMYFCKPVIAVNNGGPT 556
+I ++K D + L+ C A V E FG+ +EAM P A N GGP
Sbjct: 650 QIRWIKGQTDRVRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPA 709
Query: 555 ETVVNEVTGFLCEP-NSKSFATAMSKLV--LNPDLI--ERFGQAGLKRFETNFSFDAFTE 391
E +V+EV+GF P N K + ++ DLI + AGL+R +++ +
Sbjct: 710 EIIVDEVSGFHINPLNGKEASDKIADFFQKCKEDLIYWSKMSTAGLQRIYECYTWQIYAT 769
Query: 390 QLDGILTRERQIVSEARGVEYEERKKK 310
++ + + I R ++ EER+ K
Sbjct: 770 KVLNMAS----IYGFWRTLDKEERQAK 792
>04_03_0297 +
14060687-14060787,14061341-14061473,14061566-14061720,
14061850-14062042,14062130-14062248,14062332-14062548,
14062670-14062765,14062908-14063084,14063175-14063291,
14063398-14063564,14063680-14063904,14064052-14064373,
14064624-14064868,14065227-14065290,14065414-14065437,
14065561-14065602
Length = 798
Score = 42.7 bits (96), Expect = 3e-04
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Frame = -3
Query: 732 EIDDKITFMKSPKDDEKISLLHNC-----KALVYTPSNEHFGIVPLEAMYFCKPVIAVNN 568
++ +I ++K+ D + L+ C A V E FG+ +EAM P A N
Sbjct: 641 QLKGQIRWIKAQTDRVRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQ 700
Query: 567 GGPTETVVNEVTGFLCEP-NSK----SFATAMSKLVLNPDLIERFGQAGLKR 427
GGP E +++ V+GF P N + A K +P + AGL+R
Sbjct: 701 GGPAEIIIDGVSGFHVNPINDREAGIKIADFFQKCKEDPSYWNKVSTAGLQR 752
>04_03_0029 -
9714031-9714072,9714196-9714219,9714343-9714406,
9714763-9715007,9715258-9715579,9715727-9715951,
9716067-9716233,9716340-9716456,9716547-9716723,
9716866-9716961,9717083-9717299,9717385-9717503,
9717591-9717783,9717913-9718067,9718160-9718292,
9718846-9718946
Length = 798
Score = 42.7 bits (96), Expect = 3e-04
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Frame = -3
Query: 732 EIDDKITFMKSPKDDEKISLLHNC-----KALVYTPSNEHFGIVPLEAMYFCKPVIAVNN 568
++ +I ++K+ D + L+ C A V E FG+ +EAM P A N
Sbjct: 641 QLKGQIRWIKAQTDRVRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQ 700
Query: 567 GGPTETVVNEVTGFLCEP-NSK----SFATAMSKLVLNPDLIERFGQAGLKR 427
GGP E +++ V+GF P N + A K +P + AGL+R
Sbjct: 701 GGPAEIIIDGVSGFHVNPINGREAGIKIADFFQKCKEDPSYWNKVSTAGLQR 752
>06_03_0908 -
25858909-25859185,25859765-25859892,25860061-25860765,
25860882-25860944,25861031-25861084,25861338-25861514,
25861644-25861813,25862011-25862065,25862220-25862918,
25863110-25863173,25863515-25863723,25866138-25866227,
25866390-25866617
Length = 972
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -3
Query: 657 ALVYTPSNEHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGFLCEPNSK-SFATAMSK 481
A V P E FG+ +EA PVIA NG P E G L +P+ + + A A+ K
Sbjct: 566 AFVNVPYFEQFGVTLIEAAMHGLPVIATKNGAPVEIHQVLDNGLLVDPHDQHAIADALYK 625
Query: 480 LVLNPDLIERFGQAGLK 430
L+ L + + GLK
Sbjct: 626 LLSEKQLWSKCRENGLK 642
>12_02_0912 -
24238659-24238897,24239353-24239462,24239548-24239741,
24239839-24239907,24240096-24240282,24240683-24240969,
24241593-24241880
Length = 457
Score = 41.5 bits (93), Expect = 7e-04
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Frame = -3
Query: 744 AAELEIDDKITFMKSPKDDEKISLLHNCKALVYTPSNEHFGIVPLEAMYFCKPVIAVNNG 565
+ EL ID+ + F K + + LL A +++ ++EHFGI +E M IA +
Sbjct: 324 STELHIDELVEFHKDISYRDLVQLLGGAVAGLHSMTDEHFGISVVEYMAAGAIPIAHKSA 383
Query: 564 GPTETVV----NEVTGFLCEPNSKSFATAMSKLVLNPDLIERFGQAGLKRFETNFSFDAF 397
GP +V + TGFL + +A A+ K++ P+ ++ FS F
Sbjct: 384 GPMMDIVLDEDGQQTGFLAS-EKEEYAEAIVKVLRMPEAERHEMATAARKRAQRFSEHRF 442
Query: 396 TE 391
E
Sbjct: 443 HE 444
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -3
Query: 633 EHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGFLCEP-NSKSFATAMSKLVLNPDLI 457
E FG+ +EA + P++A NGGP + G L +P N A A+ KLV + L
Sbjct: 625 EPFGLTLIEAAAYGLPMVATRNGGPVDIHRVLDNGILVDPHNQNEIAEALYKLVSDKQLW 684
Query: 456 ERFGQAGLK 430
+ Q GLK
Sbjct: 685 AQCRQNGLK 693
>02_01_0627 +
4708648-4708836,4708975-4709064,4709579-4709664,
4710108-4710332,4711251-4711314,4711793-4712491,
4712657-4712764,4712920-4713051,4713183-4713359,
4713920-4713973,4714072-4714134,4714227-4714928,
4715048-4715175,4715563-4715839
Length = 997
Score = 41.1 bits (92), Expect = 0.001
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = -3
Query: 633 EHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEV--TGFLCEPNSK-SFATAMSKLVLNPD 463
E FG+ +EA P+IA NG P E +N+V G L +P+ + + A A+ KL+ +
Sbjct: 600 EQFGVTLIEAAMNGLPIIATKNGAPVE--INQVLNNGLLVDPHDQNAIADALYKLLSDKQ 657
Query: 462 LIERFGQAGLKRFETNFSFDAFTEQ-LDGILT 370
L R + GLK FS+ + L ILT
Sbjct: 658 LWSRCRENGLKNIH-QFSWPEHCKNYLSRILT 688
>06_01_0661 -
4807712-4807759,4807857-4807995,4808107-4808351,
4808482-4808800,4809140-4809364,4809453-4809619,
4809702-4809818,4809903-4810076,4810173-4810268,
4810351-4810567,4810663-4810781,4810931-4811123,
4811207-4811358,4811448-4811568,4811980-4812074
Length = 808
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Frame = -3
Query: 708 MKSPKDDEKISLLHNCKALVYTPS-NEHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVT 532
M ++ E + + K + P+ E FG+ +EAM P IA +GGP E +V+ V+
Sbjct: 644 MNRVRNGELYRYICDTKGVFVQPAFYEAFGLTVIEAMTCGLPTIATCHGGPAEIIVDGVS 703
Query: 531 GFLCEPNSKSFATAM-----SKLVLNPDLIERFGQAGLKRFETNFSFDAFTEQL 385
G +P A + K + + Q GL+R +++ ++E+L
Sbjct: 704 GLHIDPYHSDKAADILVNFFEKCKQDSTYWDNISQGGLQRIYEKYTWKLYSERL 757
>01_06_1818 -
40093327-40093384,40093501-40093580,40093661-40093946,
40095007-40095291,40095386-40095513,40095625-40096560,
40096650-40096712,40096801-40096854,40096963-40097139,
40097452-40097583,40097666-40097785,40097935-40098627,
40098760-40099158,40099263-40099271
Length = 1139
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = -3
Query: 633 EHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGFLCEPNSK-SFATAMSKLVLNPDLI 457
E FG+ +EA P++A NGGP + G L +P+ + + A A+ KLV + +L
Sbjct: 520 EPFGLTLIEAAAHGLPIVATKNGGPVDIKNALNNGLLVDPHDQHAIADALLKLVADKNLW 579
Query: 456 ERFGQAGLKRFE 421
+ + GL+ +
Sbjct: 580 QECRKNGLRNIQ 591
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 36.3 bits (80), Expect = 0.026
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 633 EHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGFLCEPNSKSFATA 490
E FG+ +EA + PV+A NGGP + + G L +P+ + TA
Sbjct: 551 EPFGLTIIEAAAYGLPVVATKNGGPVDILKVLSNGLLVDPHDAAAITA 598
>01_01_1120 -
8884760-8885017,8886088-8886150,8887365-8887627,
8887728-8887882,8888194-8888465,8889593-8889735,
8890150-8890444
Length = 482
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = -3
Query: 633 EHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGFLCEPNSKSFATAMSK 481
E FG + +EAM F PV+ GG TE VV+ TG L P K ++K
Sbjct: 380 ECFGRITIEAMAFKLPVLGTAAGGTTEIVVDGSTGLL-HPAGKEGVAPLAK 429
>03_02_0948 -
12645972-12646010,12646612-12646750,12646846-12647090,
12647184-12647505,12647781-12648005,12648185-12648351,
12648428-12648544,12648989-12649162,12649372-12649467,
12649624-12649840,12650267-12650385,12650478-12650670,
12651212-12651363,12651485-12651611,12651731-12651828
Length = 809
Score = 35.9 bits (79), Expect = 0.034
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Frame = -3
Query: 657 ALVYTPSNEHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGFLCEP-----NSKSFAT 493
A V E FG+ +EAM P A +GGP E + + ++GF +P + A
Sbjct: 666 AFVQPAFYEAFGLTVVEAMTCGLPTFATVHGGPAEIIEHGISGFHIDPYHPDQAANLIAD 725
Query: 492 AMSKLVLNPDLIERFGQAGLKRFETNFSFDAFTEQL 385
+ +P+ GL+R +++ ++E+L
Sbjct: 726 FFEQCKQDPNHWVEVSNRGLQRIYEKYTWKIYSERL 761
>07_01_0160 + 1126674-1126937,1128442-1129998
Length = 606
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 553 FSWTPIIHSNHWFTEIH 603
FSW P HSNHW+ IH
Sbjct: 357 FSWVPQAHSNHWY-NIH 372
>07_01_0003 +
16711-17016,17107-17177,17269-17461,17929-17984,
18511-18588,18873-18929,19396-19903
Length = 422
Score = 29.9 bits (64), Expect = 2.2
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Frame = -3
Query: 687 EKISLLHNCKALVYTPS-NEHFGIVPLEAMYFCKPVIAVNNGGPTETVVNE---VTGFLC 520
E++S + + PS +E G V LEAM PV+A GG + + + T FL
Sbjct: 275 EELSQAYASGDVFVMPSESETLGFVVLEAMSSGVPVVAARAGGIPDIIPEDQEGKTSFLY 334
Query: 519 EPNS-KSFATAMSKLVLNPDLIERFGQAGLKRFETNFSFDAFTEQL 385
P + + +L+ +L E +A K E F + A T ++
Sbjct: 335 TPGDVDDCVSKIERLLTCEELRETMRKAARKEME-KFDWRAATRKI 379
>09_02_0306 + 7126178-7127398
Length = 406
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 657 ALVYTPSNEHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGF 526
A V E +G +EAM PVI N GPTE +NE G+
Sbjct: 287 AFVLPSRGEGWGRPVVEAMSMELPVIVTNWSGPTE-YLNEENGY 329
>06_01_0230 +
1765913-1766251,1766365-1766445,1766553-1766651,
1766748-1766837,1766937-1767000,1767093-1767193,
1767284-1767393,1767515-1767758,1767852-1768052,
1768296-1768487,1768594-1768680,1768790-1768918,
1769276-1769392
Length = 617
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 633 EHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGF 526
E G++ L+ M + P + GG +TV+ TGF
Sbjct: 493 EPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGF 528
>05_07_0253 +
28692309-28692643,28693530-28693569,28693709-28693777,
28694219-28694273,28694796-28694871,28695565-28695702,
28697361-28697388,28698177-28698413,28698516-28698665,
28698726-28698734
Length = 378
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/83 (28%), Positives = 34/83 (40%)
Frame = -3
Query: 717 ITFMKSPKDDEKISLLHNCKALVYTPSNEHFGIVPLEAMYFCKPVIAVNNGGPTETVVNE 538
+ F P DDE +S+LHN + T I L A YF K V G ++V++
Sbjct: 120 VIFFSKP-DDELMSVLHNLPDINITCKARQVFIEKLNA-YFAKAVY-YRKGIVPASLVDD 176
Query: 537 VTGFLCEPNSKSFATAMSKLVLN 469
G LC T + +N
Sbjct: 177 QRGSLCSTMYMKTRTLFMNINMN 199
>11_06_0458 +
23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -3
Query: 687 EKISLLHNCKALVYTPSNEHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGFL 523
+KI +CKA V + G++ +Y + G E V+NE+ FL
Sbjct: 260 QKIGNQFDCKAFVSLSQHPVMGMIFETILYQVNDEVGTIRSGDKEQVINELRAFL 314
>02_01_0612 -
4573595-4573699,4574153-4574200,4574653-4575693,
4576088-4576164,4576265-4576657,4577230-4577382,
4577938-4578100
Length = 659
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 651 VYTPSNEHFGIVPLEAMYFCKPVIAVNNGGPTETVVNEVTGFLCE 517
V+ P + F ++ L + PVI ++ G T+TV+ +T C+
Sbjct: 82 VHMPDMDGFKLLELVGLEMDLPVIMLSANGETQTVMKGITHGACD 126
>09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 151 DT*FQIKVL*IVK-IQMMNSDEIFSSQHLNYTTIYFVHTLSYNVKHCWSV 297
D Q + L ++K IQ+ N +E+ S N ++FVH + HCW++
Sbjct: 1115 DNFLQPECLPMIKVIQISNCEELASLPTNNL--VHFVHLEDLEICHCWNL 1162
>01_01_0019 +
141084-141631,142191-142431,142563-142680,142749-142789,
143114-143146,145028-145082,145179-145339,145450-145719,
146106-146184,146311-146375,146507-146575
Length = 559
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = -3
Query: 561 PTETVVNEVTGFLCEPNSKSFATAMSKLVLNPD-LIERFGQAGLKRFETNFSFDAFTEQL 385
P E VVN++ + SF+ AMS++ D L ER+G + + N + +
Sbjct: 467 PLELVVNDMLKTQATSDPDSFSEAMSRVRQRHDELKERYGVSDITVSVQNVASQLGYSSI 526
Query: 384 DGILTRERQIVSEARGVEYEERKK 313
D + T E ++ R +E R K
Sbjct: 527 DSV-TLEDMVLEIVRQIERLIRAK 549
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,126
Number of Sequences: 37544
Number of extensions: 305095
Number of successful extensions: 748
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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