Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e09
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-14|AAN63415.1|  400|Caenorhabditis elegans Hypothetical p...   117   1e-26
U39649-1|AAA80383.2|  437|Caenorhabditis elegans Temporarily ass...    88   5e-18
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z69902-7|CAA93769.1|  618|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AB023424-1|BAA82800.1|  618|Caenorhabditis elegans kel-1 protein.      31   1.1  
Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical pr...    29   3.5  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    29   3.5  
AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    29   3.5  
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U37429-14|AAN63415.1|  400|Caenorhabditis elegans Hypothetical
           protein F09E5.2 protein.
          Length = 400

 Score =  117 bits (281), Expect = 1e-26
 Identities = 53/117 (45%), Positives = 78/117 (66%)
 Frame = -3

Query: 723 DKITFMKSPKDDEKISLLHNCKALVYTPSNEHFGIVPLEAMYFCKPVIAVNNGGPTETVV 544
           D+I F+ SP D +K++L+   +A++YTP  EHFGIVP+EAMY   PVIAVN GGP E+V 
Sbjct: 280 DQIVFLHSPSDTQKVNLIRRSRAVLYTPDREHFGIVPVEAMYLGTPVIAVNTGGPCESVR 339

Query: 543 NEVTGFLCEPNSKSFATAMSKLVLNPDLIERFGQAGLKRFETNFSFDAFTEQLDGIL 373
           N  TGFL +  +++FA  M  L+ + ++  R  + G K  +  F+F+AF  +LD I+
Sbjct: 340 NNETGFLVDQTAEAFAEKMIDLMKDEEMYRRMSEEGPKWVQKVFAFEAFARKLDEII 396


>U39649-1|AAA80383.2|  437|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 249 protein.
          Length = 437

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
 Frame = -3

Query: 738 ELEIDDKITFMKSPKDDEKISLLHNCKALVYTPSNEHFGIVPLEAMYFCKPVIAVNNGGP 559
           EL + D +TF+ SP D  K  L   C   +YTP NEHFGIVP+EA+   +PVI  ++GGP
Sbjct: 261 ELNVTDMVTFIPSPTDKVKFQLYQQCDTALYTPPNEHFGIVPIEALDQRRPVIVCDSGGP 320

Query: 558 TETVVNEVTGF-LCEPNSKSFATAMSKLVLN---PDLIERFGQAGLK-RFETNFSFDAFT 394
            ETV+ ++TG  + +P  +  A AM   +     P+L    G A  + R ET FS   F 
Sbjct: 321 AETVLEDITGTKIAKPCGELLAEAMLHHMNKRDWPELDTDEGYAKQRHRLETEFSTRGFC 380

Query: 393 EQLD 382
             +D
Sbjct: 381 GNID 384


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/72 (26%), Positives = 39/72 (54%)
 Frame = -3

Query: 744 AAELEIDDKITFMKSPKDDEKISLLHNCKALVYTPSNEHFGIVPLEAMYFCKPVIAVNNG 565
           A +L+I +++ +  +   ++ +  L      ++T  NEHFGI  +EAM     +++ ++G
Sbjct: 340 AEKLDISEQLIWQLNVPYEDLVVELSKALISIHTMHNEHFGISVVEAMAASTIILSNDSG 399

Query: 564 GPTETVVNEVTG 529
           GP   +V +  G
Sbjct: 400 GPRMDIVKDYEG 411


>Z69902-7|CAA93769.1|  618|Caenorhabditis elegans Hypothetical
           protein C47D12.7 protein.
          Length = 618

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 564 PHYSQQSLVYRNTLLLMELCQNAHLMECTPMLCSCAIKKF 683
           P++++ S +Y N  +L E  QN +LM C   LC   ++ +
Sbjct: 25  PNFNKTS-IYSNPTMLGEFYQNLNLMRCQQELCDVVLEAY 63


>AB023424-1|BAA82800.1|  618|Caenorhabditis elegans kel-1 protein.
          Length = 618

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 564 PHYSQQSLVYRNTLLLMELCQNAHLMECTPMLCSCAIKKF 683
           P++++ S +Y N  +L E  QN +LM C   LC   ++ +
Sbjct: 25  PNFNKTS-IYSNPTMLGEFYQNLNLMRCQQELCDVVLEAY 63


>Z74475-6|CAA98961.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 156 IISNKSTLNSKNPDDEF**DIQFTTF-ELYNNLLCSYTLIQCQTLLECLHFVIFSSSLHI 332
           I  NK T++  N  D +        F E+YN L+    +    ++L     VIF  +L+I
Sbjct: 148 IFQNKFTIDYLNESDSYTLQTPNMPFIEIYNVLIPFMCICMAISILSNTTSVIFLRNLNI 207

Query: 333 QRLEPQRLFVFLL 371
           QR + +  F+ ++
Sbjct: 208 QRKKAETNFLLIM 220


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1651

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 609  EAMYFCKPVIAVNNGGPTETVVNEVTGFLCEPNSKSFA 496
            E  +  KPV+   NG   E+   +VT   C P+S S+A
Sbjct: 1567 EICFTQKPVLRCQNGKSQESKKQKVTSVYCLPSSNSWA 1604


>AL023811-2|CAA19423.1|  299|Caenorhabditis elegans Hypothetical
           protein C51F7.2 protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 156 IISNKSTLNSKNPDDEF**DIQFTTF-ELYNNLLCSYTLIQCQTLLECLHFVIFSSSLHI 332
           I  NK T++  N  D +        F E+YN L+    +    ++L     VIF  +L+I
Sbjct: 148 IFQNKFTIDYLNESDSYTLQTPNMPFIEIYNVLIPFMCICMAISILSNTTSVIFLRNLNI 207

Query: 333 QRLEPQRLFVFLL 371
           QR + +  F+ ++
Sbjct: 208 QRKKAETNFLLIM 220


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 6, isoform
            c protein.
          Length = 1651

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 609  EAMYFCKPVIAVNNGGPTETVVNEVTGFLCEPNSKSFA 496
            E  +  KPV+   NG   E+   +VT   C P+S S+A
Sbjct: 1567 EICFTQKPVLRCQNGKSQESKKQKVTSVYCLPSSNSWA 1604


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 509 LFGSHKKPVTSLTTVSVGPPLFTA----ITGLQKYIASNGTMPKCSFDGVYTNAL 661
           LFGS   P  + TT    PP   A    + G+Q+  +S G +P  S  G  T++L
Sbjct: 148 LFGSSTAPAAAATTSFGAPPATAAAPLGLGGIQQQNSSGGGLPNAS--GTATSSL 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,173
Number of Sequences: 27780
Number of extensions: 322354
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)