Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e03
         (792 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9W2U2 Cluster: CG32687-PA; n=8; Endopterygota|Rep: CG3...    87   6e-16
UniRef50_Q9N4Z5 Cluster: Putative uncharacterized protein; n=3; ...    77   7e-13
UniRef50_Q4S0G8 Cluster: Chromosome 2 SCAF14781, whole genome sh...    66   1e-09
UniRef50_UPI00004D948A Cluster: Leucine-rich repeat-containing p...    66   1e-09
UniRef50_A7SVP7 Cluster: Predicted protein; n=1; Nematostella ve...    59   1e-07
UniRef50_Q96CX6 Cluster: Leucine-rich repeat-containing protein ...    58   3e-07

>UniRef50_Q9W2U2 Cluster: CG32687-PA; n=8; Endopterygota|Rep:
           CG32687-PA - Drosophila melanogaster (Fruit fly)
          Length = 377

 Score = 86.6 bits (205), Expect = 6e-16
 Identities = 47/83 (56%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
 Frame = +1

Query: 133 PLTILLYDIYLSQLINIFVTGVFFDNRVEHIKFVDFCGKYRIPLLQYLCSSKCITGSWES 312
           P T+  Y    +  +N    GVFFDNRVEHIKFVDFCGKYR+PLLQYLCSSKCI     +
Sbjct: 295 PRTLAEYLNSANCCVNPNCKGVFFDNRVEHIKFVDFCGKYRVPLLQYLCSSKCIEPEQPA 354

Query: 313 REVDSNP-----HPHMMRKVLLG 366
               S P        MMRKVLLG
Sbjct: 355 ARGSSVPAASASSGFMMRKVLLG 377


>UniRef50_Q9N4Z5 Cluster: Putative uncharacterized protein; n=3;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 375

 Score = 76.6 bits (180), Expect = 7e-13
 Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
 Frame = +1

Query: 127 ISPLTILLYDIYLSQLINIFVTGVFFDNRVEHIKFVDFCGKYRIPLLQYLCSSKCITG-- 300
           I P  ++ Y     Q +N    GV+FD RVEHIKFVDFCGKYR+PL+Q+LCS +C  G  
Sbjct: 292 ILPSDLVAYLGSACQCVNPECQGVYFDARVEHIKFVDFCGKYRVPLMQFLCSPRCSAGVP 351

Query: 301 --SWESREVDSNPHPHMMRKVLLG 366
              +++          +MR+VLLG
Sbjct: 352 SVDYDTSSESEEEIEPIMRRVLLG 375


>UniRef50_Q4S0G8 Cluster: Chromosome 2 SCAF14781, whole genome
           shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 2
           SCAF14781, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 384

 Score = 66.1 bits (154), Expect = 1e-09
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 6/65 (9%)
 Frame = +1

Query: 190 TGVFFDNRVEHIKFVDFCGKYRIPLLQYLCSSKCIT------GSWESREVDSNPHPHMMR 351
           TGV+FD+ V HIKFVDFCGKYR+PL+ YLCS +C +       S    E +S+   + ++
Sbjct: 320 TGVYFDSCVRHIKFVDFCGKYRLPLMHYLCSPQCTSPCSSNPQSDAESEDESSVPAYRLQ 379

Query: 352 KVLLG 366
           +VLLG
Sbjct: 380 RVLLG 384


>UniRef50_UPI00004D948A Cluster: Leucine-rich repeat-containing
           protein 58; n=2; Xenopus tropicalis|Rep: Leucine-rich
           repeat-containing protein 58 - Xenopus tropicalis
          Length = 333

 Score = 65.7 bits (153), Expect = 1e-09
 Identities = 35/64 (54%), Positives = 41/64 (64%), Gaps = 6/64 (9%)
 Frame = +1

Query: 193 GVFFDNRVEHIKFVDFCGKYRIPLLQYLCSSKCIT--GSWESREVDS----NPHPHMMRK 354
           GV+FD  V  IKFVDFCGKYR+PL+ YLCS +C +  GS    E DS    N     M+K
Sbjct: 270 GVYFDCCVRQIKFVDFCGKYRLPLMHYLCSPECSSPCGSTSQSESDSEDEANAAARRMQK 329

Query: 355 VLLG 366
           VLLG
Sbjct: 330 VLLG 333


>UniRef50_A7SVP7 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 358

 Score = 59.3 bits (137), Expect = 1e-07
 Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
 Frame = +1

Query: 133 PLTILLYDIYLSQLINIFVTGVFFDNRVEHIKFVDFCGKYRIPLLQYLCS---------S 285
           P  +L Y     + +N    GV+FD RV +++FVDFCGKYR+PL QYLCS          
Sbjct: 271 PPQLLSYLNSARRCVNPCCKGVYFDARVRNVRFVDFCGKYRLPLEQYLCSPHENYRPDDG 330

Query: 286 KCITGSWESREVDSNPHPH-MMRKVLLG 366
               G   S + + N  P   M+KVLLG
Sbjct: 331 SLSCGFTTSSDEEENVVPEDKMKKVLLG 358


>UniRef50_Q96CX6 Cluster: Leucine-rich repeat-containing protein 58;
           n=30; Deuterostomia|Rep: Leucine-rich repeat-containing
           protein 58 - Homo sapiens (Human)
          Length = 403

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +1

Query: 193 GVFFDNRVEHIKFVDFCGKYRIPLLQYLCSSKC 291
           GV+FD  V  IKFVDFCGKYR+PL+ YLCS +C
Sbjct: 335 GVYFDCCVRQIKFVDFCGKYRLPLMHYLCSPEC 367


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,317,408
Number of Sequences: 1657284
Number of extensions: 11378261
Number of successful extensions: 22509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22505
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)