Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e03
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    28   1.3  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.3  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   4.1  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   5.4  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    26   7.1  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    26   7.1  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   9.4  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.4  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 284 ELHKYCSNGILYFPQKSTNLMCSTRLSKKTPVTNMLISCDR 162
           E+ + C +  +Y P+K  NL+   +L+ + P   +++ CDR
Sbjct: 740 EVERICRDNNVYNPEKVKNLLKEAKLADQLP---LILVCDR 777


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 191 VTNMLISCDR*ISYKSIVNGDIKYLNILYLHNKKNQ 84
           +T  LI C   ++ K +++ D+K  NIL  H  K+Q
Sbjct: 805 ITRQLIQCLTLLNEKHVIHCDLKPENILLCHPFKSQ 840


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/46 (28%), Positives = 29/46 (63%)
 Frame = +3

Query: 231 CRFLWKVQDSITTIFMQFKMYYWKLGKP*GRQ*SSPTYDAKGSSGL 368
           C+FL++ ++ +T++      YY +L K   ++ S P ++++GS+ L
Sbjct: 184 CKFLFEAKERLTSVVETEHEYYTELVKV--KEASWPLFNSQGSNHL 227


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = +1

Query: 166 SQLINIFVTGVFFDNRVEHIKFV---DFC--GKYRI---PLLQYLCSSKCITGSWESR 315
           SQ++  +VTG+ F N+V++  +    ++C  G + I   P+  YL S   +   W ++
Sbjct: 587 SQILGNYVTGITFMNKVDYATYFSAEEYCKQGIHMIPTTPISGYLRSPSYVQQDWNAK 644


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 272 YCSNGILYFPQKSTNLMC 219
           YC NG LY  QK  + +C
Sbjct: 137 YCKNGKLYLTQKDNSNLC 154


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 94  LLWRYKIFKYFISPLTILLYDIYLSQLINIFVTGVFFDNRVE 219
           L WRYK   YF+  +  +  + Y+  L+ +      +D R++
Sbjct: 51  LFWRYKSLYYFLMRIVFIASESYICYLM-LMTLRPTYDKRLD 91


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 68  GLKTFAGFFCYGDIKYSNTLYHH*QYFCMIFTY 166
           G+   A   C+ +  Y+ T Y+  QY C IF +
Sbjct: 564 GIIQAAYALCFPNTDYALTAYNDLQYICRIFEH 596


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +3

Query: 9   RNKSNQMISCVRLKNKLTCRVLKRLLVFFVMEI*NIQILYITINNT 146
           +N  N+ I+  ++KN LT    + L VF  + +  ++++++  NN+
Sbjct: 10  KNDYNEKITKRKVKNNLTDGKARALTVFESLPLEVLRLIFLLSNNS 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,131
Number of Sequences: 5004
Number of extensions: 54043
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)