Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16e03
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734... 31 1.4
05_01_0529 - 4561792-4561854,4561954-4562016,4562413-4562471,456... 29 4.2
11_08_0004 + 27518384-27519018,27519147-27519397,27520437-275205... 29 5.6
10_07_0177 - 13841148-13841267,13841569-13841645,13842710-138428... 29 5.6
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135... 29 5.6
05_06_0133 + 25905455-25905545,25905650-25906202,25906310-259068... 28 7.4
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 28 7.4
05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290... 28 9.8
>11_06_0667 +
26071774-26072070,26072352-26073153,26073209-26073411,
26075078-26075521,26075703-26075758,26076323-26076402,
26077098-26077174,26077279-26078301
Length = 993
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -2
Query: 281 LHKYCSNGILYFPQKSTNLMCSTRLSKKTPVTNMLISCDR*ISYKSIVNGDIKYLN 114
LH Y + +++ KS+N++ + S + ++ +SCD V G + YL+
Sbjct: 814 LHSYATPAVIHCDIKSSNILLDSSWSPRLSSFDIAVSCDEAECVDICVRGTLGYLD 869
>05_01_0529 -
4561792-4561854,4561954-4562016,4562413-4562471,
4562887-4563988
Length = 428
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 253 RIPLLQYLCSSKCITGSWESREVDSNP-HPHMMRKVLLG 366
R+P + LC SKC++ W R V S+P H H++ + LG
Sbjct: 32 RVPY-KSLCRSKCVSRRW--RRVISHPDHRHLLPRYHLG 67
>11_08_0004 +
27518384-27519018,27519147-27519397,27520437-27520559,
27523499-27524529
Length = 679
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 239 KSTNLMCSTRLSKKTPVTNMLISCDR*ISYKSIVNGDIKYLNILYLHN 96
+ T+L TRL L I +KS+V+GD+K NIL +N
Sbjct: 485 RHTHLPLPTRLDIAVGCAEALACMHSNIGHKSVVHGDVKSGNILLGNN 532
>10_07_0177 -
13841148-13841267,13841569-13841645,13842710-13842860,
13842942-13843056,13843145-13843236,13843317-13843370,
13843849-13843935,13844023-13844109,13844191-13844274,
13844359-13844445,13844793-13845549,13846491-13846648
Length = 622
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 241 CGKYRIPLLQ-YLCSSKCITGSWESREV 321
C K +IP+ + Y CS+KC + +W+ V
Sbjct: 80 CVKSKIPVAKSYHCSAKCFSDAWQHHRV 107
>01_01_0154 -
1355601-1356102,1356197-1356389,1356465-1356520,
1356997-1357066,1357188-1357314,1357418-1357695,
1357908-1358065,1358166-1358246,1358339-1358410,
1358531-1358602,1358729-1358867,1358987-1360045,
1360170-1360257
Length = 964
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 281 LHKYCSNGILYFPQKSTNLMCSTRLSKK 198
LHK C+ I++ K+TN++ +TRL K
Sbjct: 738 LHKGCNPPIIHRDVKATNILLNTRLEAK 765
>05_06_0133 +
25905455-25905545,25905650-25906202,25906310-25906806,
25906905-25907043,25907182-25907253,25907344-25907415,
25907503-25907583,25907899-25908065,25908148-25908416,
25908512-25908638,25908752-25908820,25908928-25909120,
25909215-25909707
Length = 940
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 281 LHKYCSNGILYFPQKSTNLMCSTRLSKK 198
LHK C+ +++ K+TN++ +TRL K
Sbjct: 717 LHKACNPPLIHRDVKATNILLNTRLEAK 744
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 241 CGKYRIPLLQ-YLCSSKCITGSWESREV 321
C K +IP+ + Y CS+KC + +W+ V
Sbjct: 80 CLKSKIPVAKSYHCSAKCFSDAWQHHRV 107
>05_06_0136 +
25928152-25928659,25928767-25928899,25928987-25929058,
25929150-25929221,25929507-25929670,25929760-25930025,
25930115-25930241,25930599-25930667,25930765-25930957,
25931053-25931299,25931342-25931470,25932367-25932654
Length = 755
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 281 LHKYCSNGILYFPQKSTNLMCSTRLSKK 198
LHK+C+ +++ K+TN++ + RL K
Sbjct: 475 LHKWCNPPLIHRDVKATNILLNARLEAK 502
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,600,381
Number of Sequences: 37544
Number of extensions: 271790
Number of successful extensions: 530
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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