Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e03
         (792 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113577-1|AAM29582.1|  377|Drosophila melanogaster RH29237p pro...    87   3e-17
AE014298-1463|AAF46596.2|  377|Drosophila melanogaster CG32687-P...    87   3e-17
AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA...    31   1.4  
AY118630-1|AAM49999.1|  264|Drosophila melanogaster RE59650p pro...    30   4.2  
AE014134-786|AAF50970.2|  264|Drosophila melanogaster CG2937-PA ...    30   4.2  
BT023850-1|AAZ86771.1| 1028|Drosophila melanogaster IP13787p pro...    29   5.5  
AE014296-1409|ABI31245.1| 1876|Drosophila melanogaster CG33274-P...    29   5.5  

>AY113577-1|AAM29582.1|  377|Drosophila melanogaster RH29237p
           protein.
          Length = 377

 Score = 86.6 bits (205), Expect = 3e-17
 Identities = 47/83 (56%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
 Frame = +1

Query: 133 PLTILLYDIYLSQLINIFVTGVFFDNRVEHIKFVDFCGKYRIPLLQYLCSSKCITGSWES 312
           P T+  Y    +  +N    GVFFDNRVEHIKFVDFCGKYR+PLLQYLCSSKCI     +
Sbjct: 295 PRTLAEYLNSANCCVNPNCKGVFFDNRVEHIKFVDFCGKYRVPLLQYLCSSKCIEPEQPA 354

Query: 313 REVDSNP-----HPHMMRKVLLG 366
               S P        MMRKVLLG
Sbjct: 355 ARGSSVPAASASSGFMMRKVLLG 377


>AE014298-1463|AAF46596.2|  377|Drosophila melanogaster CG32687-PA
           protein.
          Length = 377

 Score = 86.6 bits (205), Expect = 3e-17
 Identities = 47/83 (56%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
 Frame = +1

Query: 133 PLTILLYDIYLSQLINIFVTGVFFDNRVEHIKFVDFCGKYRIPLLQYLCSSKCITGSWES 312
           P T+  Y    +  +N    GVFFDNRVEHIKFVDFCGKYR+PLLQYLCSSKCI     +
Sbjct: 295 PRTLAEYLNSANCCVNPNCKGVFFDNRVEHIKFVDFCGKYRVPLLQYLCSSKCIEPEQPA 354

Query: 313 REVDSNP-----HPHMMRKVLLG 366
               S P        MMRKVLLG
Sbjct: 355 ARGSSVPAASASSGFMMRKVLLG 377


>AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA
            protein.
          Length = 1660

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 265  VMESCTFHKNLQI*CVLRGCQRRHL*QIC 179
            + E  T  + L I C+LRG QRRH+  IC
Sbjct: 1377 LFEDLTGRETLNIYCLLRGVQRRHVTPIC 1405


>AY118630-1|AAM49999.1|  264|Drosophila melanogaster RE59650p
           protein.
          Length = 264

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 790 CKXFKSAIIRGKXERRKFL 734
           C  FK AI+RGK ERR+ L
Sbjct: 229 CNLFKEAILRGKRERRQLL 247


>AE014134-786|AAF50970.2|  264|Drosophila melanogaster CG2937-PA
           protein.
          Length = 264

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 790 CKXFKSAIIRGKXERRKFL 734
           C  FK AI+RGK ERR+ L
Sbjct: 229 CNLFKEAILRGKRERRQLL 247


>BT023850-1|AAZ86771.1| 1028|Drosophila melanogaster IP13787p
           protein.
          Length = 1028

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 259 PLLQYLCSSKCITGSWESREVDSNPHPHMMRKVLLG 366
           P+L Y+ + K   G WE  +VDS    H++  +  G
Sbjct: 549 PILGYVINYKRDNGDWEELQVDSKTTSHLLTNLWCG 584


>AE014296-1409|ABI31245.1| 1876|Drosophila melanogaster CG33274-PB
            protein.
          Length = 1876

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 259  PLLQYLCSSKCITGSWESREVDSNPHPHMMRKVLLG 366
            P+L Y+ + K   G WE  +VDS    H++  +  G
Sbjct: 1295 PILGYVINYKRDNGDWEELQVDSKTTSHLLTNLWCG 1330


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,115,689
Number of Sequences: 53049
Number of extensions: 509555
Number of successful extensions: 906
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)