Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e03
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical ...    77   2e-14
Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AL021175-8|CAA15970.2|  201|Caenorhabditis elegans Hypothetical ...    28   8.8  
AL021175-7|CAE54921.1|  329|Caenorhabditis elegans Hypothetical ...    28   8.8  

>AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3a protein.
          Length = 375

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
 Frame = +1

Query: 127 ISPLTILLYDIYLSQLINIFVTGVFFDNRVEHIKFVDFCGKYRIPLLQYLCSSKCITG-- 300
           I P  ++ Y     Q +N    GV+FD RVEHIKFVDFCGKYR+PL+Q+LCS +C  G  
Sbjct: 292 ILPSDLVAYLGSACQCVNPECQGVYFDARVEHIKFVDFCGKYRVPLMQFLCSPRCSAGVP 351

Query: 301 --SWESREVDSNPHPHMMRKVLLG 366
              +++          +MR+VLLG
Sbjct: 352 SVDYDTSSESEEEIEPIMRRVLLG 375


>Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical
           protein K09A11.5 protein.
          Length = 650

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -2

Query: 365 PRRTFRIICG*GLLSTSRLSQLPVIHFELHKYCSNGILYF-PQKSTNLMCSTRLSKKTPV 189
           P+R+F +I   G+ S  + S   V HF    + ++ IL F PQ     MCS + S+K P 
Sbjct: 412 PKRSFGMISPSGMESFRQSSFANVSHFPSSCFPASSILSFGPQH----MCSQQFSQKPPT 467

Query: 188 T 186
           +
Sbjct: 468 S 468


>AL021175-8|CAA15970.2|  201|Caenorhabditis elegans Hypothetical
           protein Y6E2A.9b protein.
          Length = 201

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 254 LYFPQKSTNLMCSTRLSKKTP----VTNMLISCDR 162
           +Y P     + C  R+S +TP    +T ML+SC R
Sbjct: 81  VYHPDTGEKMFCLGRMSAQTPANMVITGMLLSCYR 115


>AL021175-7|CAE54921.1|  329|Caenorhabditis elegans Hypothetical
           protein Y6E2A.9a protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 254 LYFPQKSTNLMCSTRLSKKTP----VTNMLISCDR 162
           +Y P     + C  R+S +TP    +T ML+SC R
Sbjct: 81  VYHPDTGEKMFCLGRMSAQTPANMVITGMLLSCYR 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,271,766
Number of Sequences: 27780
Number of extensions: 298976
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)