Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e03
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   3.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.9  
AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly pro...    21   9.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.9  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 85  WFFLLWRYKIFKYF 126
           W  +L RYKI KY+
Sbjct: 91  WQLILRRYKIMKYY 104


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 693 TNFLLQQ*CYSVSCRNLR 746
           T +LL   C  ++C+N+R
Sbjct: 2   TKWLLLMVCLGIACQNIR 19


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 293 IHFELHKYCSNGILYFPQKSTNLMCSTRLS 204
           +HF L  Y +  + Y  ++   L C  RL+
Sbjct: 162 VHFALRIYRNGTVNYLMRRHLILSCQGRLN 191


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 293 IHFELHKYCSNGILYFPQKSTNLMCSTRLS 204
           +HF L  Y +  + Y  ++   L C  RL+
Sbjct: 162 VHFALRIYRNGTVNYLMRRHLILSCQGRLN 191


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 293 IHFELHKYCSNGILYFPQKSTNLMCSTRLS 204
           +HF L  Y +  + Y  ++   L C  RL+
Sbjct: 213 VHFALRIYRNGTVNYLMRRHLILSCQGRLN 242


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 293 IHFELHKYCSNGILYFPQKSTNLMCSTRLS 204
           +HF L  Y +  + Y  ++   L C  RL+
Sbjct: 162 VHFALRIYRNGTVNYLMRRHLILSCQGRLN 191


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 193 GVFFDNRVEHIKFVDFCG 246
           GVF+ N + ++ F+D  G
Sbjct: 368 GVFYKNYLLNVSFIDAAG 385


>AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly
           protein MRJP4 protein.
          Length = 27

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 693 TNFLLQQ*CYSVSCRNLR 746
           T +LL   C  ++C+N+R
Sbjct: 2   TKWLLLMVCLGIACQNIR 19


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 101 GDIKYSNTLYHH*QYFCMIFTYH 169
           G + +S+T+  +   F M+FTY+
Sbjct: 205 GYLIFSSTISFYLPLFVMVFTYY 227


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 193 GVFFDNRVEHIKFVDFCG 246
           GVF+ N + ++ F+D  G
Sbjct: 458 GVFYKNYLLNVSFIDAAG 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,487
Number of Sequences: 438
Number of extensions: 4167
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)