Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16e02
(495 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_38872| Best HMM Match : Histone (HMM E-Value=3e-31) 29 2.8
SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 28 3.7
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17) 28 4.9
SB_57970| Best HMM Match : Histone (HMM E-Value=9.8e-31) 27 8.5
SB_56481| Best HMM Match : Histone (HMM E-Value=8.6e-29) 27 8.5
SB_39197| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_34142| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_32335| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_29672| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_25346| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_24672| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_24338| Best HMM Match : Histone (HMM E-Value=9.7e-28) 27 8.5
SB_23111| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_16864| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_13575| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_11336| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_10189| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_7802| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_4428| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_3228| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_59150| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_51806| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_49903| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_46692| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_40749| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_39962| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_27259| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_25215| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_20041| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_18317| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_14748| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_5066| Best HMM Match : Histone (HMM E-Value=9.8e-31) 27 8.5
SB_2687| Best HMM Match : Histone (HMM E-Value=4e-29) 27 8.5
SB_1957| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_57921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 25 SSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLTLFNNACIKKST 156
SS ++ FA+ + +CV L NLC+ T + + CI+ T
Sbjct: 39 SSLLSSYFARARTKNCVFLLHGRNLCSGQNTTPIMDAWCIRNYT 82
>SB_38872| Best HMM Match : Histone (HMM E-Value=3e-31)
Length = 242
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALLNN 123
+QV+PD S K ++N F+ND E + +L + + +S R+V + LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAH-YNKRSTISSREVQTAVRLLLPA 101
Query: 122 VSVTF 108
TF
Sbjct: 102 GKTTF 106
>SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 237 KHVNYSFKF--KRKILVRIDLFAQPIAKSGFDHGHLSGERCRFDQF 368
+HV Y KF +R R+ F + +A+ +DH LSG C +QF
Sbjct: 178 EHVQYEHKFDGQRSNGDRMRTF-KAMARVNYDHERLSGGSCDTEQF 222
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = -2
Query: 215 DKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFLV 36
+K+ +++E N S R+ DFL++AL + + + RFV V+T LS LA +
Sbjct: 35 NKLAQMIEGTALHNTESIRKSDFLVYALCSTLLSSHPACRFV---VVTLHTLSCLAAASI 91
Query: 35 TKLERSI 15
+ + +
Sbjct: 92 NSIPQQV 98
>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -2
Query: 260 LKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHAL 132
L+R+ +F + I N+++YK + N++ R++ +L H L
Sbjct: 12 LRRICGIFWPNVISNEELYKNTSSSSLVNQIRYRRLKWLGHVL 54
>SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17)
Length = 573
Score = 27.9 bits (59), Expect = 4.9
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Frame = -2
Query: 284 PDKDFSLKLKRVINMFLNDEIENDKIYKLVETVD-SSNKLSRRQVDFLIHALLNNVSVTF 108
PD+ + K +I NDE+ N++ + V SS S + + L+ + + SV+
Sbjct: 250 PDRKIASKASHLIRCLGNDEMYNEQFDTIFRVVHISSFNTSVQALMLLLQVMSSRQSVSD 309
Query: 107 TLH-----RFVDDNVLTQDELSFLANFLVTKLERSIPIA 6
+ + +D N+ T + + N L ++ +A
Sbjct: 310 RFYQALYTKMLDPNLCTSSKQAMFLNILFKSMKTDTSLA 348
>SB_57970| Best HMM Match : Histone (HMM E-Value=9.8e-31)
Length = 118
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 293 QVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALL 129
QV+PD S K ++N F+ND E + +L + + +S R+V + LL
Sbjct: 40 QVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAH-YNKKHTISSREVQTAVRLLL 95
>SB_56481| Best HMM Match : Histone (HMM E-Value=8.6e-29)
Length = 125
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIE 219
+QV+PD S K ++N F+ND E
Sbjct: 46 KQVHPDTGISTKAMGIMNSFVNDIFE 71
>SB_39197| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_34142| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_32335| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_29672| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_25346| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_24672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 293 QVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALL 129
QV+PD S K ++N F+ND E + +L + + +S R+V + LL
Sbjct: 40 QVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAH-YNKKHTISSREVQTAVRLLL 95
>SB_24338| Best HMM Match : Histone (HMM E-Value=9.7e-28)
Length = 100
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_23111| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_16864| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 125
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_13575| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_11336| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 115
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 36 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 92
>SB_10189| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_7802| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_4428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 65 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 121
>SB_3228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_59150| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_51806| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_49903| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_46692| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 103
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 24 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 80
>SB_40749| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_39962| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 98
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 19 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 75
>SB_27259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 260 LKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHAL 132
L+R+ +F + I N ++YK + N++ R++ +L H L
Sbjct: 12 LRRICGIFWPNVISNQELYKNTSSSSLVNQIRYRRLKWLGHVL 54
>SB_25215| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_20041| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_18317| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_14748| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_5066| Best HMM Match : Histone (HMM E-Value=9.8e-31)
Length = 118
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 293 QVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALL 129
QV+PD S K ++N F+ND E + +L + + +S R+V + LL
Sbjct: 40 QVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAH-YNKKHTISSREVQTAVRLLL 95
>SB_2687| Best HMM Match : Histone (HMM E-Value=4e-29)
Length = 122
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIENDKI-YKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + + + +S R++ I LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAAESSRLAHYNKKSTISSREIQTAIRLLL 99
>SB_1957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 296 EQVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALL 129
+QV+PD S K ++N F+ND E + +L + + +S R+V + LL
Sbjct: 43 KQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAH-YNKRSTISSREVQTAVRLLL 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,880,919
Number of Sequences: 59808
Number of extensions: 219864
Number of successful extensions: 514
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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