Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16e01
         (813 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I449 Cluster: Putative uncharacterized protein PFE026...    33   6.5  
UniRef50_Q4Z1H7 Cluster: Protease, putative; n=4; Plasmodium|Rep...    33   6.5  
UniRef50_UPI0000499E0F Cluster: hypothetical protein 13.t00037; ...    33   8.6  

>UniRef50_Q8I449 Cluster: Putative uncharacterized protein PFE0260w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFE0260w - Plasmodium falciparum
           (isolate 3D7)
          Length = 611

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 253 KYSLTSNFPHTNNNSR*KNKHTLNLKTR*NTHLIYTRKIYN 375
           KY+ T+  P+ NNN+   N    N K + N + IY+   YN
Sbjct: 338 KYNKTTTIPNNNNNNNNNNNSNNNKKNKKNYYNIYSNIYYN 378


>UniRef50_Q4Z1H7 Cluster: Protease, putative; n=4; Plasmodium|Rep:
           Protease, putative - Plasmodium berghei
          Length = 441

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 339 EHAFDLYKKNI*FTIKILLKHERSVATRAERSQCSKKVAP*STLNSKFALLSASLFTKNF 518
           E+ F+ YKKNI    KILL  +       E+  C+  + P   ++  F  L   L +KNF
Sbjct: 81  ENIFNFYKKNIYLFSKILLYMKNGATFLTEK--CTSSIIPQLLISISFFFLHFYLLSKNF 138


>UniRef50_UPI0000499E0F Cluster: hypothetical protein 13.t00037;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 13.t00037 - Entamoeba histolytica HM-1:IMSS
          Length = 677

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 520 SKFFVNKLADNNANLEFNVLYGATFFEH*LRSARVATER 404
           + F VN+L DNNAN+    + G T +++ + S  +  ER
Sbjct: 163 NSFVVNRLLDNNANVTLKTIKGLTPWDYAIMSDEICVER 201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,568,942
Number of Sequences: 1657284
Number of extensions: 11327233
Number of successful extensions: 20263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20253
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)