Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d24
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    32   0.070
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    27   2.0  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   3.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    23   5.8  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.0  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    25   8.0  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = -2

Query: 708 LGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGNFWVPPIEDQLK 553
           LG L  LRE+ L  N + V+P E+GTL       +L +EGN    P++D  K
Sbjct: 223 LGLLTELREVLLFDNMISVIPAELGTL---FQLKILGIEGN----PLQDVYK 267



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 690 LRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 586
           L EL++  N L  LPPEIG L    N  +L   GN
Sbjct: 183 LTELYINHNNLTRLPPEIGKL---KNLVILDASGN 214



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 708 LGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGNFWVPPIE 565
           +G+L  L  L   GN +  +PPE+G   L   + VL  +    V P E
Sbjct: 200 IGKLKNLVILDASGNSIKTIPPELGL--LTELREVLLFDNMISVIPAE 245


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +3

Query: 213 RCVVAPILKYLATCS 257
           RCV++P +K+LATCS
Sbjct: 220 RCVLSPDVKHLATCS 234


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 627 DLASNK-SVLRLEGNFWVPPIEDQLKLGPSHVL 532
           +LA  K ++L ++  F  PPI+D L LG  +V+
Sbjct: 175 ELAKKKGAILVVDSTFAPPPIQDALVLGADYVV 207


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 22.6 bits (46), Expect(2) = 5.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 474 PPPPPQTVDKSKKA 433
           PPPPP+ ++ S K+
Sbjct: 373 PPPPPELLNHSPKS 386



 Score = 21.4 bits (43), Expect(2) = 5.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 528 YLRSETYKVLYSRHMSAKPPPPP 460
           +L  E+ +  +S    + PPPPP
Sbjct: 353 HLNDESSRSRWSNISYSPPPPPP 375


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 530 SSTWDGPSLSWSSMGGTQKLPSSLSTDLLLARSNVPISGG 649
           +S WD  +   S + G   L  SLS D+   RSN P+  G
Sbjct: 165 TSDWDEQNEYVSEVEGDYNLLGSLSNDIQF-RSNPPVISG 203


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 495 SRHMSAKPPPPPQTVDKSKKASRA 424
           SRH SA PP PP+ +     AS A
Sbjct: 322 SRHGSATPPHPPKIMPDDISASLA 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,013
Number of Sequences: 5004
Number of extensions: 43976
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)