Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d24
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 516 ETYKVLYSRHMSAKPPPPPQTVDKSKKASRAA 421
           ET+ +LY     A   PPP   D  K   R A
Sbjct: 109 ETFSLLYYEFDVATKEPPPWETDSYKLIGRIA 140


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 699  LARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGNFW 580
            L  L  L L GNRLV  P  +  + L +    L L  N W
Sbjct: 889  LRSLEILRLSGNRLVTFP--VWQVTLNARLVELSLGSNPW 926


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 334 KSHSLTHGEPGPDRHTC 284
           +SH  +HG+ G D + C
Sbjct: 78  QSHLRSHGKEGEDPYRC 94


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 477 KPPPPPQTVDKSKKASRA 424
           +PP PP +++ +  ASR+
Sbjct: 906 EPPQPPNSLETAMVASRS 923


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 477 KPPPPPQTVDKSKKASRA 424
           +PP PP +++ +  ASR+
Sbjct: 902 EPPQPPNSLETAMVASRS 919


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,478
Number of Sequences: 438
Number of extensions: 3453
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)