Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d22
         (751 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7BCR6 Cluster: Putative uncharacterized protein; n=1; ...    36   1.4  
UniRef50_Q91LG7 Cluster: ORF73; n=1; Shrimp white spot syndrome ...    34   3.3  
UniRef50_A2YTD2 Cluster: Putative uncharacterized protein; n=3; ...    33   5.7  
UniRef50_Q9RJR0 Cluster: Putative glycerone kinase; n=1; Strepto...    33   9.9  

>UniRef50_A7BCR6 Cluster: Putative uncharacterized protein; n=1;
           Actinomyces odontolyticus ATCC 17982|Rep: Putative
           uncharacterized protein - Actinomyces odontolyticus ATCC
           17982
          Length = 595

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -2

Query: 735 FGALLPIFEVEVGTSVLYFPFLRLRWARRCFTSHF*G*GGHDGALLPVYFLSSMVRCGFG 556
           +G+  P+ E  +  S      L L   R  FTS   G GG  G   P  F+ +M    FG
Sbjct: 297 YGSGYPLEEDAIAGSYSIAFLLALMLGRAVFTSFTIGMGGSGGVFAPTLFIGAMAGAAFG 356

Query: 555 RILRP 541
            ++ P
Sbjct: 357 DVISP 361


>UniRef50_Q91LG7 Cluster: ORF73; n=1; Shrimp white spot syndrome
           virus|Rep: ORF73 - White spot syndrome virus (WSSV)
          Length = 1044

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +2

Query: 311 RKRALLHLQRGR--AKDKHLK*EEWISHNCPKLRNLRHLHDFFTELARIGNV*NSSALLS 484
           ++RA+ + ++ +  +KD HL  + WI  N   +   +H+ DF+ + +++    N +  L 
Sbjct: 718 KERAVSYFEQNKLSSKDGHLSNKWWIELNDLNIMFEKHVEDFYKKCSKV----NDAESLK 773

Query: 485 AIFTDTDTEHYRHNTAKQ 538
            IF D +    ++ TAK+
Sbjct: 774 DIFNDFEKTCDKYKTAKR 791


>UniRef50_A2YTD2 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 309

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 35  RNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 145
           +NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 130 QNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 166


>UniRef50_Q9RJR0 Cluster: Putative glycerone kinase; n=1;
           Streptomyces coelicolor|Rep: Putative glycerone kinase -
           Streptomyces coelicolor
          Length = 593

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 219 DASSDVAGRDMLLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIKTIPRCA 64
           D ++  AG+D    +D AV DA+ SGT  +P   +   RA+   +  +   A
Sbjct: 344 DRAAATAGQDTAAAQDTAVSDAAASGTTAVPVASDASRRAAGTVLAALDAVA 395


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 796,146,069
Number of Sequences: 1657284
Number of extensions: 16493620
Number of successful extensions: 45591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45347
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)