Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d22
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   4.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   6.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   6.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.0  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 380 SILLTSNVYLWLVLAADVRVHA 315
           S L+    ++WLVL++ VR +A
Sbjct: 488 SFLVNDFGFIWLVLSSTVRAYA 509


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 634 MGSKAPSCPPQPQ 672
           +GS A +CPP P+
Sbjct: 89  LGSYAANCPPSPK 101



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 675 MGSKAPKCPPQPQ 713
           +GS A  CPP P+
Sbjct: 89  LGSYAANCPPSPK 101



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 596 GSKAPSCPPQPQ 631
           GS A +CPP P+
Sbjct: 90  GSYAANCPPSPK 101


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 616 PTSTSKMGSKAPSCPPQPQKWEVKHRSAHLNLKNGK*STEVP 741
           P++ S  GSK     P+P +W  +  ++         +TE P
Sbjct: 416 PSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVSTTEAP 457



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 657 PTSTSKMGSKAPKCPPQPQKW 719
           P++ S  GSK  +  P+P +W
Sbjct: 416 PSTPSADGSKPVQTTPKPGQW 436


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 17  QQEPHTRNATHKKEAKAQ 70
           QQEPH R+A  K+ A  Q
Sbjct: 264 QQEPHRRDAFLKEVADFQ 281


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 17  QQEPHTRNATHKKEAKAQ 70
           QQEPH R+A  K+ A  Q
Sbjct: 264 QQEPHRRDAFLKEVADFQ 281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,087
Number of Sequences: 336
Number of extensions: 4149
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)