Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d22
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1059 - 10775143-10776063                                         33   0.18 
10_01_0274 - 2901033-2901778,2902475-2902634                           31   0.74 
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639...    29   3.0  
01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567...    28   9.1  

>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 35  RNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 145
           +NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 126 QNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +2

Query: 596 GSKAPSCPPQPQKWEVKHRRAHLNLKNGK*STEVPTSTSKMGSKAPKCPP 745
           G  AP CPP P              + G+ + E P ST   G+ AP+CPP
Sbjct: 213 GQPAPECPPPPTPAP----------ECGQPAPEYPPSTPAYGTPAPECPP 252


>05_02_0078 -
           6386278-6386291,6386462-6386594,6386721-6388613,
           6391153-6391239,6391691-6391765,6393982-6394327,
           6394428-6394450
          Length = 856

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 617 PPQPQKWEVKHRRAHLNLKNGK 682
           PP PQ ++V  R+ H+N++N K
Sbjct: 185 PPSPQTFQVHERQKHINIENMK 206



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 658 PPQPQKWEVKHRSAHLNLKNGK 723
           PP PQ ++V  R  H+N++N K
Sbjct: 185 PPSPQTFQVHERQKHINIENMK 206


>01_07_0291 +
           42555233-42555444,42556515-42556550,42556652-42556796,
           42556885-42556938,42557130-42557260,42557830-42558056,
           42558670-42558846,42558928-42559076
          Length = 376

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +2

Query: 272 ALKLSKI*NPYYRRKRALLHLQRGR 346
           A ++S++  PY RR RA+ HL++GR
Sbjct: 220 AFRMSEVAEPYIRR-RAVRHLEKGR 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,188,279
Number of Sequences: 37544
Number of extensions: 484554
Number of successful extensions: 1459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)