Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d22
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.3  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 141 TAVLPNPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 37
           TA L     P P   AKTI  I R  F  A F+ + F
Sbjct: 444 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 480


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 141 TAVLPNPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 37
           TA L     P P   AKTI  I R  F  A F+ + F
Sbjct: 430 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 466


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 141 TAVLPNPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 37
           TA L     P P   AKTI  I R  F  A F+ + F
Sbjct: 464 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 500


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -2

Query: 141 TAVLPNPGNPRPRASAKTIKTIPRCAF--ASFLCVAF 37
           TA L     P P   AKTI  I R  F  A F+ + F
Sbjct: 413 TAELRKKEPPHPIRVAKTIDVIARITFPVAYFMFLTF 449


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 551 IRPNPHLTILLKK*TGSKAPSCPPQPQ 631
           I P+  +T   K+    ++P CPP P+
Sbjct: 191 IGPSIRITPAKKRIKLEQSPLCPPAPR 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,022
Number of Sequences: 438
Number of extensions: 4949
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)