Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d20
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...   104   2e-23
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    36   0.005
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    30   0.43 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   1.0  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   3.1  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   4.0  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   5.4  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    26   7.1  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   9.4  

>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  104 bits (249), Expect = 2e-23
 Identities = 50/127 (39%), Positives = 72/127 (56%)
 Frame = -3

Query: 777 NXQVWHXRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVD 598
           N QVWH R+ ++   ++   ELE T      D KNYH W +R W ++ F  Y +EL   +
Sbjct: 110 NYQVWHHRQKILSLTKNYERELEFTKKMFEIDSKNYHVWSYRVWILQNFNDYSQELKLTN 169

Query: 597 NLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLI 418
            L+  D+ NNSAWN R++V+           ++E+ Y  +KI F  +N+SAWNYL G+L 
Sbjct: 170 ELLEKDIYNNSAWNHRFYVLFETSKVVSWSLEEELNYLKDKILFAPDNQSAWNYLCGVL- 228

Query: 417 HDKRGLS 397
            DK G S
Sbjct: 229 -DKSGPS 234



 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
 Frame = -3

Query: 786 SPXNXQVWHXR-RVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKEL 610
           +P +  VW  R ++L         ELE   +      KNY  W HRQ  +     YE+EL
Sbjct: 72  NPAHYTVWAYRFQILNHTPSYIDNELEWLDEIAEDFQKNYQVWHHRQKILSLTKNYEREL 131

Query: 609 DFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
           +F   +   D +N   W+ R +++ N   +S     QE+  T E +     N SAWN+
Sbjct: 132 EFTKKMFEIDSKNYHVWSYRVWILQNFNDYS-----QELKLTNELLEKDIYNNSAWNH 184



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = -3

Query: 714 LELTGDALLQDPKNYHAWQHR-QWAIKTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVV 538
           L LTG  ++ +P +Y  W +R Q    T    + EL+++D +  D  +N   W+ R  ++
Sbjct: 62  LNLTGFLIMNNPAHYTVWAYRFQILNHTPSYIDNELEWLDEIAEDFQKNYQVWHHRQKIL 121

Query: 537 NNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
           +    +     ++E+ +T +       N   W+Y
Sbjct: 122 SLTKNY-----ERELEFTKKMFEIDSKNYHVWSY 150


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = -3

Query: 681 PKNYHAWQHRQWAIKT--FGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNN-NLGWSDL 511
           PK Y  + HR+W ++   +  +  E+   + L++ D RN   W+ R +VV+      +  
Sbjct: 105 PKVYWIFNHRRWCLENAPYPNWNYEMMITEKLLSADARNFHGWHYRRYVVSQIERAGNCS 164

Query: 510 ICQQEVCYTLEKINFVKNNESA 445
           + ++E+ YT   I    +N SA
Sbjct: 165 LAKKEMEYTTSAIATNFSNFSA 186



 Score = 34.7 bits (76), Expect = 0.015
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
 Frame = -3

Query: 717 ELELTGDALLQDPKNYHAWQHRQWAIKTF------GLYEKELDFVDNLITDDVRNNSAWN 556
           E+ +T   L  D +N+H W +R++ +          L +KE+++  + I  +  N SA +
Sbjct: 129 EMMITEKLLSADARNFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSNFSALH 188

Query: 555 QRYFVV----------NNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLIH 415
            R  ++          N+    +  I +QE+    + +    ++ S W Y R L+ H
Sbjct: 189 NRTKLIETILNLEADPNSQKALAKQILEQELDMIHQAVFTDPDDSSVWIYHRWLMGH 245


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = -3

Query: 381 TSFCEELYKNKCRSPFLLAFIIDVCEDAIKKKDTNCFHNADRAVELCQA---LATRYDKI 211
           +SF  E  +N      + AF  D C   + KK T   HN D  + LC A   L  R    
Sbjct: 345 SSFFNEFVQNNLE--IIAAFNYD-CYTLLFKKITEAIHNNDTPIPLCCAKILLYARRQLT 401

Query: 210 RSKYWNYLCE 181
           R   WN L +
Sbjct: 402 RMARWNNLID 411



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 486 CNTLLADKSNPTSLNYCSLQSIADSTLNYY 575
           CN +L+   NP +L +    SI D  LN +
Sbjct: 611 CNYVLSSSKNPMNLLFTLHNSITDGKLNVH 640


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/71 (23%), Positives = 27/71 (38%)
 Frame = -3

Query: 783 PXNXQVWHXRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDF 604
           P +   WH   ++    +D    L+   +AL   P N   W    +     GLY+   D 
Sbjct: 73  PKSQFCWHALAIVYRETKDYNNSLKCYQNALAISPNNESLWYDAAYLQAQLGLYQPLFDN 132

Query: 603 VDNLITDDVRN 571
            + L+  D  N
Sbjct: 133 WNRLLQLDSSN 143


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = -3

Query: 378 SFCEELYKNKCRSPFLLAFIIDVC-EDAIKKKDTNCFHNADRAVELCQALATRYDK---I 211
           + C++L +N CR+P       + C + A+   D  C  N  R   L   L   Y K   I
Sbjct: 283 TLCKKLARNACRTPCCDKLFCEECIQTALLDSDFEC-PNCHRKDVLLDTLNPDYQKQREI 341

Query: 210 RSKYWNYLCERYKKYQSEQLSNDNKT 133
            +   + L    K       S+DN T
Sbjct: 342 EAVVKSVLGSNSKNSDKVGTSDDNNT 367


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -3

Query: 543 VVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEE 364
           + +    WS    +Q+V  TL +INFV  N           I  K G   ++++ +    
Sbjct: 577 IKSGTFSWSKKTLKQQVTPTLRQINFVAKNGEL------TCIFGKVGAGKSSLLEACMGN 630

Query: 363 LYKN 352
           +YKN
Sbjct: 631 MYKN 634


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 693 LLQDPKNYHAWQHRQWAI-KTFGLYEKELD 607
           LLQ+ K Y  W+ R  A+ K FG  E +LD
Sbjct: 119 LLQEAKTYEEWKERARALDKYFGNDEWKLD 148


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 489 NTLLADKSNPTSLNYCSLQSIADSTLNYYERR 584
           N+   +  NPT +N CS     D+T N  +++
Sbjct: 222 NSSTNESPNPTDINVCSNDDATDNTENNLKKK 253


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/76 (22%), Positives = 34/76 (44%)
 Frame = -1

Query: 308 ARMLLKKKIQTASTMQTELWSYVRRWPLDTTKLEVNIGIIYVKDTRNTKVNSLVMTIKQT 129
           A +LLK   Q + T + ++W+ + R   D+    +   I YVK+     +      +   
Sbjct: 356 ADLLLKSNPQVSPTSERQVWAKIYR---DSQINILQDSITYVKNYMEESLQKTYKPLPNL 412

Query: 128 I**LMNNSLFYYICNH 81
           +  L+ NS+  ++  H
Sbjct: 413 LQYLILNSISIFLLQH 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,799
Number of Sequences: 5004
Number of extensions: 69321
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)