Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16d20
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0722 + 19729331-19729582,19730535-19730644,19730810-197309... 128 7e-30
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 60 3e-09
01_06_0285 + 28183108-28183209,28183495-28183754,28183950-281842... 38 0.007
11_06_0510 + 24420402-24422582 32 0.45
11_06_0514 - 24477720-24479915 31 1.4
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 30 1.8
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 28 7.4
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 28 9.7
>09_04_0722 +
19729331-19729582,19730535-19730644,19730810-19730930,
19731080-19731175,19731429-19731838,19732251-19732309,
19733235-19733287,19733432-19733485
Length = 384
Score = 128 bits (308), Expect = 7e-30
Identities = 79/222 (35%), Positives = 111/222 (50%), Gaps = 19/222 (8%)
Frame = -3
Query: 786 SPXNXQVWHXRRVLVEWLQDP--TMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKE 613
+P N Q+WH +R L E L E E T L D KNYHAW HRQW ++ G +E E
Sbjct: 114 NPKNYQIWHHKRWLAEKLGPDIANKEHEFTRKILSMDAKNYHAWSHRQWVLQALGGWETE 173
Query: 612 LDFVDNLITDDVRNNSAWNQRYFVVNNN--LGWSDLICQQEVCYTLEKINFVKNNESAWN 439
L + + L+ +DV NNSAWNQRY V+ ++ LG + EV YT+ I NES W
Sbjct: 174 LQYCNQLLEEDVFNNSAWNQRYLVITSSPLLGGLAAMRDSEVDYTVGAILANPQNESPWR 233
Query: 438 YLRGLLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCE-------------DA 298
YL+GL + L + I+ C ++ K+ F L+ ++D+ + +A
Sbjct: 234 YLKGLYKGENNLLMADERISDVCLKVLKHDSTCVFALSLLLDLLQIGLQPSDELKGTIEA 293
Query: 297 IKKKDTNCFH--NADRAVELCQALATRYDKIRSKYWNYLCER 178
IK D +AD A +C L R D +R YW+ C R
Sbjct: 294 IKNSDPEADEAVDADLATAICSIL-QRCDPLRINYWS-CCHR 333
Score = 68.9 bits (161), Expect = 4e-12
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Frame = -3
Query: 786 SPXNXQVWHXRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFG--LYEK 616
+P N VWH RR+++E L D E++ +PKNY W H++W + G + K
Sbjct: 79 NPGNYTVWHFRRLVLEALDADLREEMDFVDRIAECNPKNYQIWHHKRWLAEKLGPDIANK 138
Query: 615 ELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
E +F +++ D +N AW+ R +V+ GW + E+ Y + + N SAWN
Sbjct: 139 EHEFTRKILSMDAKNYHAWSHRQWVLQALGGW-----ETELQYCNQLLEEDVFNNSAWNQ 193
Query: 435 LRGLLIHDKRGLSGNAVI 382
R L+I L G A +
Sbjct: 194 -RYLVITSSPLLGGLAAM 210
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 59.7 bits (138), Expect = 3e-09
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Frame = -3
Query: 717 ELELTGDALLQDPKNYHAWQHRQWAI--KTFGL-YEKELDFVDNLITDDVRNNSAWNQRY 547
EL + AL Q+PK+Y AW HR+W + K + ++ E +D L+ D RN WN R
Sbjct: 89 ELRVVEVALRQNPKSYGAWYHRKWLLNQKLAPVDFKCEFGLLDKLLKVDARNFHGWNYRR 148
Query: 546 FVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWN----YLRGLLIHDKRGLSGNAVIT 379
F+ +G + ++E+ YT++KI+ +N SAW+ L LLI +G I
Sbjct: 149 FLA-RFMGVPE---EEELKYTMDKISDNFSNYSAWHNRSILLSNLLIKQSKGFESKQKIF 204
Query: 378 S 376
S
Sbjct: 205 S 205
>01_06_0285 +
28183108-28183209,28183495-28183754,28183950-28184237,
28184385-28184495,28184815-28184905,28185146-28185214,
28185627-28185716,28185887-28185937,28186040-28186258,
28186371-28186490
Length = 466
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = -3
Query: 783 PXNXQVWHXRRVLVEWLQDPTM---ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEK- 616
P W+ R++++ D T EL+L L PKN W HR+W IK + +
Sbjct: 208 PDMLTAWNSRKIVLSVNYDFTKLKDELQLCALILSYSPKNESTWSHRRWVIKKVSEHNQD 267
Query: 615 --ELDFVDNLITDDVRNNSAWNQR 550
EL +++++ + S N R
Sbjct: 268 VSELIEMESVLVKQIAEKSKMNYR 291
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Frame = -3
Query: 786 SPXNXQVWHXRRVLV----EWLQDPT----MELELTGDALLQDPKNYHAWQHRQWAI 640
SP N W RR ++ E QD + ME L + NY AW+HR W I
Sbjct: 244 SPKNESTWSHRRWVIKKVSEHNQDVSELIEMESVLVKQIAEKSKMNYRAWRHRCWLI 300
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = -3
Query: 567 SAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLL 421
+AWN R V++ N ++ L + ++C + +++ NES W++ R ++
Sbjct: 212 TAWNSRKIVLSVNYDFTKLKDELQLCALI--LSYSPKNESTWSHRRWVI 258
>11_06_0510 + 24420402-24422582
Length = 726
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = -3
Query: 717 ELELTGDALLQDPKNYH-AWQHR-QWAIKTFGLYEK 616
+L+ ++ +DPK+Y A +HR QWA++ GLY+K
Sbjct: 448 QLKSKASSISKDPKSYRKAGEHRGQWALQRKGLYQK 483
>11_06_0514 - 24477720-24479915
Length = 731
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -3
Query: 717 ELELTGDALLQDPKNYH-AWQHR-QWAIKTFGLYEK 616
+L+ ++ +DPK+Y +HR QWA++ GLY+K
Sbjct: 448 QLKSKASSISKDPKSYRKVGEHRGQWALQRKGLYQK 483
>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 293 LIASSHTSMMKANRKGDRHLFLYNSSQNDVITAFPLRPRLSCISSPLK*FHALSLFLTKL 472
LI ++M K D +L NSS +I L+P S +++PLK + FL ++
Sbjct: 1117 LIQIFGSAMQKQESNADLAYWLSNSSSLLIILQKSLKPVGSSVTTPLKRTQTQTSFLGRM 1176
Query: 473 IF 478
+F
Sbjct: 1177 VF 1178
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 694 CIACQFKFHCGILQPFYQNPTXVPYL 771
C C +HC QP ++N T PYL
Sbjct: 208 CKRCDGAYHCYCQQPSHKNVTHGPYL 233
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = -3
Query: 648 WAIKTFGLYEKELDFVDNLIT--DDVRN--NSAWNQRYFVVNNNLGWSDLICQQEVCYTL 481
W + G+ E D V T DD N W+ + ++++G++ + E +
Sbjct: 357 WFSVSQGIAEDTSDLVSGFATIGDDSLEYPNEYWDSDEYDDDDDVGYTRQPIEDETWFLA 416
Query: 480 EKINFVKNNESAWNYLRGLLIHDK 409
+I++ +NE A + G HD+
Sbjct: 417 HEIDYPSDNEKATGHTSGPDRHDR 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,370,667
Number of Sequences: 37544
Number of extensions: 393502
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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