Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16d20
(788 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transfer... 223 6e-58
L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transfer... 223 6e-58
BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CA... 223 6e-58
BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CA... 223 6e-58
BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein. 223 6e-58
BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein. 146 8e-35
Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl transf... 52 3e-06
CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein. 52 3e-06
BC003093-1|AAH03093.1| 567|Homo sapiens Rab geranylgeranyltrans... 52 3e-06
BC053622-1|AAH53622.1| 403|Homo sapiens PTAR1 protein protein. 36 0.22
AL162412-2|CAI10945.2| 312|Homo sapiens protein prenyltransfera... 36 0.22
AL162412-1|CAI10944.1| 350|Homo sapiens protein prenyltransfera... 36 0.22
>L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 223 bits (545), Expect = 6e-58
Identities = 107/219 (48%), Positives = 146/219 (66%), Gaps = 1/219 (0%)
Frame = -3
Query: 783 PXNXQVWHXRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDF 604
P N QVWH RRVLVEWL+DP+ ELE D L QD KNYHAWQHRQW I+ F L++ EL +
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222
Query: 603 VDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLEKINFVKNNESAWNYLRG 427
VD L+ +DVRNNS WNQRYFV++N G++D + ++EV YTLE I V +NESAWNYL+G
Sbjct: 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282
Query: 426 LLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIKKKDTNCFHNADRAVE 247
+L RGLS + + +L + SP+L+AF++D+ ED ++ + N ++A+E
Sbjct: 283 IL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339
Query: 246 LCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNKTN 130
LC+ LA D IR +YW Y+ + S + ND+ TN
Sbjct: 340 LCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSPTN 376
Score = 68.9 bits (161), Expect = 2e-11
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Frame = -3
Query: 777 NXQVWHXRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFV 601
N VWH RRVL++ LQ D E+ + + PKNY W HR+ ++ +EL+F+
Sbjct: 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189
Query: 600 DNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLL 421
+++ D +N AW R +V+ W + E+ Y + + N S WN R +
Sbjct: 190 ADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWNQ-RYFV 243
Query: 420 IHDKRGLSGNAVI 382
I + G + AV+
Sbjct: 244 ISNTTGYNDRAVL 256
Score = 33.5 bits (73), Expect = 0.89
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = -3
Query: 711 ELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVDNLITDDVRNNSAWNQRYFVV 538
+LT DA+ + NY W R+ +K+ L+E E++++ +I + +N W+ R +V
Sbjct: 118 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-EMNYITAIIEEQPKNYQVWHHRRVLV 176
Query: 537 NNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
W QE+ + + +N N AW +
Sbjct: 177 E----WL-RDPSQELEFIADILNQDAKNYHAWQH 205
>L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 223 bits (545), Expect = 6e-58
Identities = 107/219 (48%), Positives = 146/219 (66%), Gaps = 1/219 (0%)
Frame = -3
Query: 783 PXNXQVWHXRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDF 604
P N QVWH RRVLVEWL+DP+ ELE D L QD KNYHAWQHRQW I+ F L++ EL +
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222
Query: 603 VDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLEKINFVKNNESAWNYLRG 427
VD L+ +DVRNNS WNQRYFV++N G++D + ++EV YTLE I V +NESAWNYL+G
Sbjct: 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282
Query: 426 LLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIKKKDTNCFHNADRAVE 247
+L RGLS + + +L + SP+L+AF++D+ ED ++ + N ++A+E
Sbjct: 283 IL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339
Query: 246 LCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNKTN 130
LC+ LA D IR +YW Y+ + S + ND+ TN
Sbjct: 340 LCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSPTN 376
Score = 68.9 bits (161), Expect = 2e-11
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Frame = -3
Query: 777 NXQVWHXRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFV 601
N VWH RRVL++ LQ D E+ + + PKNY W HR+ ++ +EL+F+
Sbjct: 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189
Query: 600 DNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLL 421
+++ D +N AW R +V+ W + E+ Y + + N S WN R +
Sbjct: 190 ADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWNQ-RYFV 243
Query: 420 IHDKRGLSGNAVI 382
I + G + AV+
Sbjct: 244 ISNTTGYNDRAVL 256
Score = 33.5 bits (73), Expect = 0.89
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = -3
Query: 711 ELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVDNLITDDVRNNSAWNQRYFVV 538
+LT DA+ + NY W R+ +K+ L+E E++++ +I + +N W+ R +V
Sbjct: 118 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-EMNYITAIIEEQPKNYQVWHHRRVLV 176
Query: 537 NNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
W QE+ + + +N N AW +
Sbjct: 177 E----WL-RDPSQELEFIADILNQDAKNYHAWQH 205
>BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 223 bits (545), Expect = 6e-58
Identities = 107/219 (48%), Positives = 146/219 (66%), Gaps = 1/219 (0%)
Frame = -3
Query: 783 PXNXQVWHXRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDF 604
P N QVWH RRVLVEWL+DP+ ELE D L QD KNYHAWQHRQW I+ F L++ EL +
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222
Query: 603 VDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLEKINFVKNNESAWNYLRG 427
VD L+ +DVRNNS WNQRYFV++N G++D + ++EV YTLE I V +NESAWNYL+G
Sbjct: 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282
Query: 426 LLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIKKKDTNCFHNADRAVE 247
+L RGLS + + +L + SP+L+AF++D+ ED ++ + N ++A+E
Sbjct: 283 IL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339
Query: 246 LCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNKTN 130
LC+ LA D IR +YW Y+ + S + ND+ TN
Sbjct: 340 LCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSPTN 376
Score = 68.9 bits (161), Expect = 2e-11
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Frame = -3
Query: 777 NXQVWHXRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFV 601
N VWH RRVL++ LQ D E+ + + PKNY W HR+ ++ +EL+F+
Sbjct: 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189
Query: 600 DNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLL 421
+++ D +N AW R +V+ W + E+ Y + + N S WN R +
Sbjct: 190 ADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWNQ-RYFV 243
Query: 420 IHDKRGLSGNAVI 382
I + G + AV+
Sbjct: 244 ISNTTGYNDRAVL 256
Score = 33.5 bits (73), Expect = 0.89
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = -3
Query: 711 ELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVDNLITDDVRNNSAWNQRYFVV 538
+LT DA+ + NY W R+ +K+ L+E E++++ +I + +N W+ R +V
Sbjct: 118 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-EMNYITAIIEEQPKNYQVWHHRRVLV 176
Query: 537 NNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
W QE+ + + +N N AW +
Sbjct: 177 E----WL-RDPSQELEFIADILNQDAKNYHAWQH 205
>BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 223 bits (545), Expect = 6e-58
Identities = 107/219 (48%), Positives = 146/219 (66%), Gaps = 1/219 (0%)
Frame = -3
Query: 783 PXNXQVWHXRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDF 604
P N QVWH RRVLVEWL+DP+ ELE D L QD KNYHAWQHRQW I+ F L++ EL +
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222
Query: 603 VDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLEKINFVKNNESAWNYLRG 427
VD L+ +DVRNNS WNQRYFV++N G++D + ++EV YTLE I V +NESAWNYL+G
Sbjct: 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282
Query: 426 LLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIKKKDTNCFHNADRAVE 247
+L RGLS + + +L + SP+L+AF++D+ ED ++ + N ++A+E
Sbjct: 283 IL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339
Query: 246 LCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNKTN 130
LC+ LA D IR +YW Y+ + S + ND+ TN
Sbjct: 340 LCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSPTN 376
Score = 68.9 bits (161), Expect = 2e-11
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Frame = -3
Query: 777 NXQVWHXRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFV 601
N VWH RRVL++ LQ D E+ + + PKNY W HR+ ++ +EL+F+
Sbjct: 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189
Query: 600 DNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLL 421
+++ D +N AW R +V+ W + E+ Y + + N S WN R +
Sbjct: 190 ADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWNQ-RYFV 243
Query: 420 IHDKRGLSGNAVI 382
I + G + AV+
Sbjct: 244 ISNTTGYNDRAVL 256
Score = 33.5 bits (73), Expect = 0.89
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = -3
Query: 711 ELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVDNLITDDVRNNSAWNQRYFVV 538
+LT DA+ + NY W R+ +K+ L+E E++++ +I + +N W+ R +V
Sbjct: 118 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-EMNYITAIIEEQPKNYQVWHHRRVLV 176
Query: 537 NNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
W QE+ + + +N N AW +
Sbjct: 177 E----WL-RDPSQELEFIADILNQDAKNYHAWQH 205
>BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein.
Length = 376
Score = 223 bits (545), Expect = 6e-58
Identities = 107/219 (48%), Positives = 146/219 (66%), Gaps = 1/219 (0%)
Frame = -3
Query: 783 PXNXQVWHXRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDF 604
P N QVWH RRVLVEWL+DP+ ELE D L QD KNYHAWQHRQW I+ F L++ EL +
Sbjct: 160 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 219
Query: 603 VDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLEKINFVKNNESAWNYLRG 427
VD L+ +DVRNNS WNQRYFV++N G++D + ++EV YTLE I V +NESAWNYL+G
Sbjct: 220 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 279
Query: 426 LLIHDKRGLSGNAVITSFCEELYKNKCRSPFLLAFIIDVCEDAIKKKDTNCFHNADRAVE 247
+L RGLS + + +L + SP+L+AF++D+ ED ++ + N ++A+E
Sbjct: 280 IL--QDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 336
Query: 246 LCQALATRYDKIRSKYWNYLCERYKKYQSEQLSNDNKTN 130
LC+ LA D IR +YW Y+ + S + ND+ TN
Sbjct: 337 LCEILAKEKDTIRKEYWRYIGRSLQSKHSTE--NDSPTN 373
Score = 68.9 bits (161), Expect = 2e-11
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Frame = -3
Query: 777 NXQVWHXRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFV 601
N VWH RRVL++ LQ D E+ + + PKNY W HR+ ++ +EL+F+
Sbjct: 127 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 186
Query: 600 DNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLL 421
+++ D +N AW R +V+ W + E+ Y + + N S WN R +
Sbjct: 187 ADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWNQ-RYFV 240
Query: 420 IHDKRGLSGNAVI 382
I + G + AV+
Sbjct: 241 ISNTTGYNDRAVL 253
Score = 33.5 bits (73), Expect = 0.89
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = -3
Query: 711 ELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVDNLITDDVRNNSAWNQRYFVV 538
+LT DA+ + NY W R+ +K+ L+E E++++ +I + +N W+ R +V
Sbjct: 115 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-EMNYITAIIEEQPKNYQVWHHRRVLV 173
Query: 537 NNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
W QE+ + + +N N AW +
Sbjct: 174 E----WL-RDPSQELEFIADILNQDAKNYHAWQH 202
>BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein.
Length = 214
Score = 146 bits (354), Expect = 8e-35
Identities = 66/120 (55%), Positives = 84/120 (70%), Gaps = 2/120 (1%)
Frame = -3
Query: 783 PXNXQVWHXRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDF 604
P N QVWH RRVLVEWL+DP+ ELE D L QD KNYHAWQHRQW I+ F L++ EL +
Sbjct: 72 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 131
Query: 603 VDNLITDDVRNNSAWNQRYFVVNNNLGWSD-LICQQEVCYTLE-KINFVKNNESAWNYLR 430
VD L+ +DVRNNS WNQRYFV++N G++D + ++EV + +FV N + YLR
Sbjct: 132 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQLVISFTCSFVTNMFACLPYLR 191
Score = 68.9 bits (161), Expect = 2e-11
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Frame = -3
Query: 777 NXQVWHXRRVLVEWLQ-DPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFV 601
N VWH RRVL++ LQ D E+ + + PKNY W HR+ ++ +EL+F+
Sbjct: 39 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 98
Query: 600 DNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLL 421
+++ D +N AW R +V+ W + E+ Y + + N S WN R +
Sbjct: 99 ADILNQDAKNYHAWQHRQWVIQEFKLWDN-----ELQYVDQLLKEDVRNNSVWNQ-RYFV 152
Query: 420 IHDKRGLSGNAVI 382
I + G + AV+
Sbjct: 153 ISNTTGYNDRAVL 165
Score = 33.5 bits (73), Expect = 0.89
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = -3
Query: 711 ELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVDNLITDDVRNNSAWNQRYFVV 538
+LT DA+ + NY W R+ +K+ L+E E++++ +I + +N W+ R +V
Sbjct: 27 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE-EMNYITAIIEEQPKNYQVWHHRRVLV 85
Query: 537 NNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
W QE+ + + +N N AW +
Sbjct: 86 E----WL-RDPSQELEFIADILNQDAKNYHAWQH 114
>Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl
transferase protein.
Length = 567
Score = 51.6 bits (118), Expect = 3e-06
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = -3
Query: 786 SPXNXQVWHXRRVLVEWLQDP--TMELELTGDALLQDPKNYHAWQHRQW-AIKTFGLYEK 616
+P + WH R L+ L +P T ELEL L D +N+H W +R++ A + +
Sbjct: 103 NPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAE 162
Query: 615 ELDFVDNLITDDVRNNSAWNQR 550
EL F D+LIT + N S+W+ R
Sbjct: 163 ELAFTDSLITRNFSNYSSWHYR 184
Score = 40.7 bits (91), Expect = 0.006
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = -3
Query: 717 ELELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVDNLITDDVRNNSAWNQRYF 544
EL L +PK+Y W HR W + + +EL+ + D RN W+ R F
Sbjct: 92 ELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRF 151
Query: 543 VVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLL 421
V + + +E+ +T I +N S+W+Y LL
Sbjct: 152 VATQ----AAVPPAEELAFTDSLITRNFSNYSSWHYRSCLL 188
>CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein.
Length = 567
Score = 51.6 bits (118), Expect = 3e-06
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = -3
Query: 786 SPXNXQVWHXRRVLVEWLQDP--TMELELTGDALLQDPKNYHAWQHRQW-AIKTFGLYEK 616
+P + WH R L+ L +P T ELEL L D +N+H W +R++ A + +
Sbjct: 103 NPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAE 162
Query: 615 ELDFVDNLITDDVRNNSAWNQR 550
EL F D+LIT + N S+W+ R
Sbjct: 163 ELAFTDSLITRNFSNYSSWHYR 184
Score = 40.7 bits (91), Expect = 0.006
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = -3
Query: 717 ELELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVDNLITDDVRNNSAWNQRYF 544
EL L +PK+Y W HR W + + +EL+ + D RN W+ R F
Sbjct: 92 ELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRF 151
Query: 543 VVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLL 421
V + + +E+ +T I +N S+W+Y LL
Sbjct: 152 VATQ----AAVPPAEELAFTDSLITRNFSNYSSWHYRSCLL 188
>BC003093-1|AAH03093.1| 567|Homo sapiens Rab
geranylgeranyltransferase, alpha subunit protein.
Length = 567
Score = 51.6 bits (118), Expect = 3e-06
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = -3
Query: 786 SPXNXQVWHXRRVLVEWLQDP--TMELELTGDALLQDPKNYHAWQHRQW-AIKTFGLYEK 616
+P + WH R L+ L +P T ELEL L D +N+H W +R++ A + +
Sbjct: 103 NPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAE 162
Query: 615 ELDFVDNLITDDVRNNSAWNQR 550
EL F D+LIT + N S+W+ R
Sbjct: 163 ELAFTDSLITRNFSNYSSWHYR 184
Score = 40.7 bits (91), Expect = 0.006
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = -3
Query: 717 ELELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVDNLITDDVRNNSAWNQRYF 544
EL L +PK+Y W HR W + + +EL+ + D RN W+ R F
Sbjct: 92 ELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRF 151
Query: 543 VVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLL 421
V + + +E+ +T I +N S+W+Y LL
Sbjct: 152 VATQ----AAVPPAEELAFTDSLITRNFSNYSSWHYRSCLL 188
>BC053622-1|AAH53622.1| 403|Homo sapiens PTAR1 protein protein.
Length = 403
Score = 35.5 bits (78), Expect = 0.22
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = -3
Query: 717 ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE-----KELDFVDNLITDDVRNNSAWNQ 553
E+E+ G+A + P NY+AW HR W ++ + EL + + V ++S ++
Sbjct: 181 EMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHY 240
Query: 552 RYFVVNN 532
R F++ +
Sbjct: 241 RQFLLKS 247
Score = 31.5 bits (68), Expect = 3.6
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 786 SPXNXQVWHXRRVLV-EWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIK 637
+P W+ R+ L+ +P +L L AL + PK+ W HR+W ++
Sbjct: 99 NPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLQ 149
>AL162412-2|CAI10945.2| 312|Homo sapiens protein prenyltransferase
alpha subunit repeat containing 1 protein.
Length = 312
Score = 35.5 bits (78), Expect = 0.22
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = -3
Query: 717 ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE-----KELDFVDNLITDDVRNNSAWNQ 553
E+E+ G+A + P NY+AW HR W ++ + EL + + V ++S ++
Sbjct: 180 EMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHY 239
Query: 552 RYFVVNN 532
R F++ +
Sbjct: 240 RQFLLKS 246
Score = 31.5 bits (68), Expect = 3.6
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 786 SPXNXQVWHXRRVLV-EWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIK 637
+P W+ R+ L+ +P +L L AL + PK+ W HR+W ++
Sbjct: 98 NPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLQ 148
>AL162412-1|CAI10944.1| 350|Homo sapiens protein prenyltransferase
alpha subunit repeat containing 1 protein.
Length = 350
Score = 35.5 bits (78), Expect = 0.22
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = -3
Query: 717 ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE-----KELDFVDNLITDDVRNNSAWNQ 553
E+E+ G+A + P NY+AW HR W ++ + EL + + V ++S ++
Sbjct: 101 EMEVCGEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHY 160
Query: 552 RYFVVNN 532
R F++ +
Sbjct: 161 RQFLLKS 167
Score = 31.1 bits (67), Expect = 4.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 762 HXRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIK 637
H + +++ +P +L L AL + PK+ W HR+W ++
Sbjct: 28 HMKELILSGTLNPIKDLHLGKLALTKFPKSPETWIHRRWVLQ 69
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,638,251
Number of Sequences: 237096
Number of extensions: 2254538
Number of successful extensions: 8643
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8621
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -