Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d20
         (788 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118534-1|AAM49903.1|  331|Drosophila melanogaster LD26412p pro...   221   1e-57
AE014134-777|AAF50977.1|  331|Drosophila melanogaster CG2976-PA ...   221   1e-57
AY058618-1|AAL13847.1|  515|Drosophila melanogaster LD31216p pro...    56   6e-08
AE014297-179|AAF52072.1|  515|Drosophila melanogaster CG12007-PA...    56   6e-08
AY069689-1|AAL39834.1|  398|Drosophila melanogaster LD45906p pro...    33   0.59 
AE014298-374|AAF45764.1|  398|Drosophila melanogaster CG3073-PA ...    33   0.59 
AY047538-1|AAK77270.1|  311|Drosophila melanogaster GH04846p pro...    31   1.8  
AE014297-844|AAF54312.1|  311|Drosophila melanogaster CG11968-PA...    31   1.8  

>AY118534-1|AAM49903.1|  331|Drosophila melanogaster LD26412p
           protein.
          Length = 331

 Score =  221 bits (539), Expect = 1e-57
 Identities = 110/215 (51%), Positives = 151/215 (70%), Gaps = 9/215 (4%)
 Frame = -3

Query: 777 NXQVWHXRRVLVEWLQDPTMELELTGDALLQD--PKNYHAWQHRQWAIKTFGLYEKELDF 604
           N QVWH RRV+VE L DP+ ELELT +AL+ D   KNYHAWQHRQWAI++F LY+ EL F
Sbjct: 116 NYQVWHHRRVIVEMLNDPSNELELTENALVNDGDAKNYHAWQHRQWAIRSFNLYDDELSF 175

Query: 603 VDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGL 424
           VD LI++D RNNSAWNQR+FV+  + G++  + Q+E+ YT+ +I  +KNNESAWNYL G+
Sbjct: 176 VDRLISEDQRNNSAWNQRFFVI-KHFGFTPELIQRELSYTMNRIRIIKNNESAWNYLVGV 234

Query: 423 LIHDKRGLSGNAVITS------FCEELYKNKCRSPFLLAFIIDVC-EDAIKKKDTNCFHN 265
           +   ++G SGNA+++S      F EELY+   RSP+LLAF+ID+  E A++ K ++    
Sbjct: 235 M---RQGDSGNALLSSYPDVVDFVEELYQAGNRSPYLLAFLIDLYQEQALQLKASDSDQL 291

Query: 264 ADRAVELCQALATRYDKIRSKYWNYLCERYKKYQS 160
           A +   LC+ +AT++D IR KYW Y+    K   S
Sbjct: 292 ARKVYGLCEDMATKHDVIRRKYWQYVANHLKNQLS 326



 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
 Frame = -3

Query: 786 SPXNXQVWHXRR-VLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKEL 610
           +P N  VW  RR VL E   D   EL+   + + Q+ KNY  W HR+  ++       EL
Sbjct: 78  NPANYTVWQYRRDVLRELKADLYAELDYLTEVIGQNSKNYQVWHHRRVIVEMLNDPSNEL 137

Query: 609 DFVDN-LITD-DVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWN 439
           +  +N L+ D D +N  AW  R + + +   + D     E+ +    I+  + N SAWN
Sbjct: 138 ELTENALVNDGDAKNYHAWQHRQWAIRSFNLYDD-----ELSFVDRLISEDQRNNSAWN 191



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = -3

Query: 771 QVWHXRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVD 598
           +V+   R ++   +     L+LT DAL  +P NY  WQ+R+  ++     LY  ELD++ 
Sbjct: 49  EVFDYMRAIIARGEKSQRALDLTTDALRLNPANYTVWQYRRDVLRELKADLY-AELDYLT 107

Query: 597 NLITDDVRNNSAWNQRYFVV 538
            +I  + +N   W+ R  +V
Sbjct: 108 EVIGQNSKNYQVWHHRRVIV 127


>AE014134-777|AAF50977.1|  331|Drosophila melanogaster CG2976-PA
           protein.
          Length = 331

 Score =  221 bits (539), Expect = 1e-57
 Identities = 110/215 (51%), Positives = 151/215 (70%), Gaps = 9/215 (4%)
 Frame = -3

Query: 777 NXQVWHXRRVLVEWLQDPTMELELTGDALLQD--PKNYHAWQHRQWAIKTFGLYEKELDF 604
           N QVWH RRV+VE L DP+ ELELT +AL+ D   KNYHAWQHRQWAI++F LY+ EL F
Sbjct: 116 NYQVWHHRRVIVEMLNDPSNELELTENALVNDGDAKNYHAWQHRQWAIRSFNLYDDELSF 175

Query: 603 VDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGL 424
           VD LI++D RNNSAWNQR+FV+  + G++  + Q+E+ YT+ +I  +KNNESAWNYL G+
Sbjct: 176 VDRLISEDQRNNSAWNQRFFVI-KHFGFTPELIQRELSYTMNRIRIIKNNESAWNYLVGV 234

Query: 423 LIHDKRGLSGNAVITS------FCEELYKNKCRSPFLLAFIIDVC-EDAIKKKDTNCFHN 265
           +   ++G SGNA+++S      F EELY+   RSP+LLAF+ID+  E A++ K ++    
Sbjct: 235 M---RQGDSGNALLSSYPDVVDFVEELYQAGNRSPYLLAFLIDLYQEQALQLKASDSDQL 291

Query: 264 ADRAVELCQALATRYDKIRSKYWNYLCERYKKYQS 160
           A +   LC+ +AT++D IR KYW Y+    K   S
Sbjct: 292 ARKVYGLCEDMATKHDVIRRKYWQYVANHLKNQLS 326



 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
 Frame = -3

Query: 786 SPXNXQVWHXRR-VLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKEL 610
           +P N  VW  RR VL E   D   EL+   + + Q+ KNY  W HR+  ++       EL
Sbjct: 78  NPANYTVWQYRRDVLRELKADLYAELDYLTEVIGQNSKNYQVWHHRRVIVEMLNDPSNEL 137

Query: 609 DFVDN-LITD-DVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWN 439
           +  +N L+ D D +N  AW  R + + +   + D     E+ +    I+  + N SAWN
Sbjct: 138 ELTENALVNDGDAKNYHAWQHRQWAIRSFNLYDD-----ELSFVDRLISEDQRNNSAWN 191



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = -3

Query: 771 QVWHXRRVLVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTF--GLYEKELDFVD 598
           +V+   R ++   +     L+LT DAL  +P NY  WQ+R+  ++     LY  ELD++ 
Sbjct: 49  EVFDYMRAIIARGEKSQRALDLTTDALRLNPANYTVWQYRRDVLRELKADLY-AELDYLT 107

Query: 597 NLITDDVRNNSAWNQRYFVV 538
            +I  + +N   W+ R  +V
Sbjct: 108 EVIGQNSKNYQVWHHRRVIV 127


>AY058618-1|AAL13847.1|  515|Drosophila melanogaster LD31216p
           protein.
          Length = 515

 Score = 56.0 bits (129), Expect = 6e-08
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = -3

Query: 723 TMELELTGDALLQDPKNYHAWQHRQWAIK--TFGLYEKELDFVDNLITDDVRNNSAWNQR 550
           T EL+LT   L+ +PK+Y+AW HR W ++      +++E+   +  +  D RN   W+ R
Sbjct: 122 TCELDLTEQCLMVNPKSYNAWHHRCWTLEQNPRADWQQEVKLCNKYLKFDERNFHTWDYR 181

Query: 549 YFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLI 418
            +V     G + +   QE+ +  EKI    +N S+W++ R LL+
Sbjct: 182 RYVT----GKAMVPATQELDFCTEKIRANFSNYSSWHH-RSLLL 220



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
 Frame = -3

Query: 786 SPXNXQVWHXRRVLVEW--LQDPTMELELTGDALLQDPKNYHAWQHRQWAI-KTFGLYEK 616
           +P +   WH R   +E     D   E++L    L  D +N+H W +R++   K      +
Sbjct: 135 NPKSYNAWHHRCWTLEQNPRADWQQEVKLCNKYLKFDERNFHTWDYRRYVTGKAMVPATQ 194

Query: 615 ELDFVDNLITDDVRNNSAWNQRYFVV-------NNNLGWSDLICQQEVCYTLEKINFVKN 457
           ELDF    I  +  N S+W+ R  ++         +   S+   Q+E+   L       N
Sbjct: 195 ELDFCTEKIRANFSNYSSWHHRSLLLPELYPNQQRDRPMSEEKLQKELEMVLTAAFTDPN 254

Query: 456 NESAWNYLRGLL 421
           + SAW Y R LL
Sbjct: 255 DSSAWFYQRWLL 266



 Score = 29.9 bits (64), Expect = 4.1
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 639 KTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNN--LGWSDLICQQEVCYTLEKINF 466
           K   ++  ELD  +  +  + ++ +AW+ R + +  N    W     QQEV    + + F
Sbjct: 116 KAHSIFTCELDLTEQCLMVNPKSYNAWHHRCWTLEQNPRADW-----QQEVKLCNKYLKF 170

Query: 465 VKNNESAWNYLR 430
            + N   W+Y R
Sbjct: 171 DERNFHTWDYRR 182


>AE014297-179|AAF52072.1|  515|Drosophila melanogaster CG12007-PA
           protein.
          Length = 515

 Score = 56.0 bits (129), Expect = 6e-08
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = -3

Query: 723 TMELELTGDALLQDPKNYHAWQHRQWAIK--TFGLYEKELDFVDNLITDDVRNNSAWNQR 550
           T EL+LT   L+ +PK+Y+AW HR W ++      +++E+   +  +  D RN   W+ R
Sbjct: 122 TCELDLTEQCLMVNPKSYNAWHHRCWTLEQNPRADWQQEVKLCNKYLKFDERNFHTWDYR 181

Query: 549 YFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLI 418
            +V     G + +   QE+ +  EKI    +N S+W++ R LL+
Sbjct: 182 RYVT----GKAMVPATQELDFCTEKIRANFSNYSSWHH-RSLLL 220



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
 Frame = -3

Query: 786 SPXNXQVWHXRRVLVEW--LQDPTMELELTGDALLQDPKNYHAWQHRQWAI-KTFGLYEK 616
           +P +   WH R   +E     D   E++L    L  D +N+H W +R++   K      +
Sbjct: 135 NPKSYNAWHHRCWTLEQNPRADWQQEVKLCNKYLKFDERNFHTWDYRRYVTGKAMVPATQ 194

Query: 615 ELDFVDNLITDDVRNNSAWNQRYFVV-------NNNLGWSDLICQQEVCYTLEKINFVKN 457
           ELDF    I  +  N S+W+ R  ++         +   S+   Q+E+   L       N
Sbjct: 195 ELDFCTEKIRANFSNYSSWHHRSLLLPELYPNQQRDRPMSEEKLQKELEMVLTAAFTDPN 254

Query: 456 NESAWNYLRGLL 421
           + SAW Y R LL
Sbjct: 255 DSSAWFYQRWLL 266



 Score = 29.9 bits (64), Expect = 4.1
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 639 KTFGLYEKELDFVDNLITDDVRNNSAWNQRYFVVNNN--LGWSDLICQQEVCYTLEKINF 466
           K   ++  ELD  +  +  + ++ +AW+ R + +  N    W     QQEV    + + F
Sbjct: 116 KAHSIFTCELDLTEQCLMVNPKSYNAWHHRCWTLEQNPRADW-----QQEVKLCNKYLKF 170

Query: 465 VKNNESAWNYLR 430
            + N   W+Y R
Sbjct: 171 DERNFHTWDYRR 182


>AY069689-1|AAL39834.1|  398|Drosophila melanogaster LD45906p
           protein.
          Length = 398

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 675 NYHAWQHRQWAIKTFG-LYEKELDFVDNLITDDVRNNSAWNQRYFVVN 535
           NYHAW HRQW ++    L + EL   +  +   + + S ++ R  +++
Sbjct: 182 NYHAWSHRQWILQNGPCLLQSELLRTEKFMRKHISDYSCYHYRQVLLS 229


>AE014298-374|AAF45764.1|  398|Drosophila melanogaster CG3073-PA
           protein.
          Length = 398

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 675 NYHAWQHRQWAIKTFG-LYEKELDFVDNLITDDVRNNSAWNQRYFVVN 535
           NYHAW HRQW ++    L + EL   +  +   + + S ++ R  +++
Sbjct: 182 NYHAWSHRQWILQNGPCLLQSELLRTEKFMRKHISDYSCYHYRQVLLS 229


>AY047538-1|AAK77270.1|  311|Drosophila melanogaster GH04846p
           protein.
          Length = 311

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
 Frame = +1

Query: 268 VEAVCIFFFNSILAYIYDEG*QERRPTLILVQFFAKRCDNSVSTKTTLI-MYKQPSQIIP 444
           VE   + F  +++  ++D G QE      + Q+FA++ DN       LI ++   SQ I 
Sbjct: 40  VEHSHVRFLGNLVLNLWDCGGQEG----FMKQYFAQQRDNIFRNVEVLIYVFDVESQEIE 95

Query: 445 RALVIFNEINFFQSVTHFLLTNQIRPA*IIVHYKVSLIPR*IITNVVRDQIVDEI 609
           R      +I+++QS    LL N        + +K+ L+P  +  +V  +++ D I
Sbjct: 96  R------DIHYYQSCLEALLQNSPEAKIFCLVHKMDLVPEGLRESVFTERMEDLI 144


>AE014297-844|AAF54312.1|  311|Drosophila melanogaster CG11968-PA
           protein.
          Length = 311

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
 Frame = +1

Query: 268 VEAVCIFFFNSILAYIYDEG*QERRPTLILVQFFAKRCDNSVSTKTTLI-MYKQPSQIIP 444
           VE   + F  +++  ++D G QE      + Q+FA++ DN       LI ++   SQ I 
Sbjct: 40  VEHSHVRFLGNLVLNLWDCGGQEG----FMKQYFAQQRDNIFRNVEVLIYVFDVESQEIE 95

Query: 445 RALVIFNEINFFQSVTHFLLTNQIRPA*IIVHYKVSLIPR*IITNVVRDQIVDEI 609
           R      +I+++QS    LL N        + +K+ L+P  +  +V  +++ D I
Sbjct: 96  R------DIHYYQSCLEALLQNSPEAKIFCLVHKMDLVPEGLRESVFTERMEDLI 144


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,099,533
Number of Sequences: 53049
Number of extensions: 696027
Number of successful extensions: 1519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)