Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16d20
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical ... 140 8e-34
AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical ... 53 3e-07
Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr... 29 3.8
U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF125963-4|AAD14745.2| 408|Caenorhabditis elegans F-box a prote... 29 5.0
Z75713-4|CAB00050.1| 603|Caenorhabditis elegans Hypothetical pr... 28 6.6
>AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical
protein R02D3.5 protein.
Length = 328
Score = 140 bits (340), Expect = 8e-34
Identities = 85/207 (41%), Positives = 123/207 (59%), Gaps = 8/207 (3%)
Frame = -3
Query: 786 SPXNXQVWHXRRVLVEWLQDPTM--ELELTGDALLQDPKNYHAWQHRQWAIKTFGL-YEK 616
SP N QVWH RR +VE + + + EL + + + KNYHAWQHRQW ++TF + EK
Sbjct: 108 SPKNYQVWHHRRFIVETIGESAVNDELHFCSEVIRDENKNYHAWQHRQWVVRTFKVPLEK 167
Query: 615 ELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEK--INFVKNNESAW 442
EL F +++ D RNNSA+N RYF++ D Q ++ L K I + NNESAW
Sbjct: 168 ELTFALHMLLLDNRNNSAYNYRYFLMTLYDKTED-ASQLDIEINLAKKFIENIPNNESAW 226
Query: 441 NYLRGLLIHDKRGLSGNAVITSFCEELYK---NKCRSPFLLAFIIDVCEDAIKKKDTNCF 271
NYL GLLI G++ N+ + SF E+LY+ + RSPFLLAFI D+ + I+ + +
Sbjct: 227 NYLAGLLI--TNGVTSNSDVVSFVEDLYETTPEEKRSPFLLAFIADMMLENIENQ-KSAE 283
Query: 270 HNADRAVELCQALATRYDKIRSKYWNY 190
+A RA +L + L + D +R Y+ +
Sbjct: 284 ESAGRAKKLYKDLQS-IDPVRVNYYRH 309
Score = 70.5 bits (165), Expect = 1e-12
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Frame = -3
Query: 786 SPXNXQVWHXRRV-LVEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFG--LYEK 616
+P N VW RRV L E D E+ D + + PKNY W HR++ ++T G
Sbjct: 73 NPANYTVWQYRRVCLTELGWDLKKEMRYLSDIIQESPKNYQVWHHRRFIVETIGESAVND 132
Query: 615 ELDFVDNLITDDVRNNSAWNQRYFVVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
EL F +I D+ +N AW R +VV + ++E+ + L + N SA+NY
Sbjct: 133 ELHFCSEVIRDENKNYHAWQHRQWVVRT----FKVPLEKELTFALHMLLLDNRNNSAYNY 188
Query: 435 LRGLL-IHDK 409
L+ ++DK
Sbjct: 189 RYFLMTLYDK 198
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = -3
Query: 714 LELTGDALLQDPKNYHAWQHRQWAIKTFGL-YEKELDFVDNLITDDVRNNSAWNQRYFVV 538
+ L D + +P NY WQ+R+ + G +KE+ ++ ++I + +N W+ R F+V
Sbjct: 63 MALLEDCIRLNPANYTVWQYRRVCLTELGWDLKKEMRYLSDIIQESPKNYQVWHHRRFIV 122
Query: 537 NNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
+G S + E+ + E I N AW +
Sbjct: 123 -ETIGESAV--NDELHFCSEVIRDENKNYHAWQH 153
>AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical
protein M57.2 protein.
Length = 580
Score = 52.8 bits (121), Expect = 3e-07
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Frame = -3
Query: 786 SPXNXQVWHXRRVLVEWLQDPTM--ELELTGDALLQDPKNYHAWQHRQWAIKTFGLYE-K 616
+P + W+ R ++ P EL L AL D +N+H W HR+ + E +
Sbjct: 119 NPKSYSAWYQRAWALQRQSAPDFKKELALCEKALQLDCRNFHCWDHRRIVARMAKRSEAE 178
Query: 615 ELDFVDNLITDDVRNNSAWNQRYFVVNN----NLGWSDLICQQEVCYTLEKIN---FV-K 460
EL+F + LI D+ N SAW+ R + N + I + + L+K+ F+
Sbjct: 179 ELEFSNKLINDNFSNYSAWHYRSIALKNIHRDEKTGAPKIDDELIASELQKVKNAFFMDA 238
Query: 459 NNESAWNYLRGLL 421
++SAW Y R LL
Sbjct: 239 EDQSAWTYTRWLL 251
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Frame = -3
Query: 717 ELELTGDALLQDPKNYHAWQHRQWAIKTFGL--YEKELDFVDNLITDDVRNNSAWNQRYF 544
EL L+ + + +PK+Y AW R WA++ ++KEL + + D RN W+ R
Sbjct: 108 ELFLSYECIKSNPKSYSAWYQRAWALQRQSAPDFKKELALCEKALQLDCRNFHCWDHRRI 167
Query: 543 VVNNNLGWSDLICQQEVCYTLEKINFVKNNESAWNY 436
V + +E+ ++ + IN +N SAW+Y
Sbjct: 168 VAR----MAKRSEAEELEFSNKLINDNFSNYSAWHY 199
>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical
protein F54F11.2 protein.
Length = 1589
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/67 (20%), Positives = 35/67 (52%)
Frame = -3
Query: 321 IIDVCEDAIKKKDTNCFHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQLSND 142
+++V + A T+ +++ + V+L +A + ++ Y C +K S +S++
Sbjct: 78 VLNVAQPAKVSPGTDKYNSYQQVVQLFKASVNLSVDPCNDFYAYTCGNFKGDMSFDISDN 137
Query: 141 NKTNDLI 121
+ TND++
Sbjct: 138 SNTNDMV 144
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
T20G5.1 protein.
Length = 1681
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Frame = -3
Query: 510 ICQQEVCYTLEKI-NFVKNNESAWNYLRGLLIHDKRGLSGNAVITSFCEELYK------- 355
IC++ CY E++ NF+K + + L +++ D+ + + V+ + +L K
Sbjct: 749 ICRESQCYDAERVKNFLKEAKLN-DQLPLIIVCDRHNMVHDLVLYLYRNQLQKYIEVFVQ 807
Query: 354 --NKCRSPFLLAFIIDV-C-EDAIKK 289
N R P ++ ++DV C EDAIK+
Sbjct: 808 KVNAARLPIVVGALLDVDCSEDAIKQ 833
>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical protein
F21G4.6 protein.
Length = 1885
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 326 PSS*MYARMLLKKKIQTASTMQTELWSYVRRW-PLDTTKLEVNIGII 189
P+ +Y LL +K + Q WS +R W P D+ K+EV I
Sbjct: 925 PTETLYTLSLLLEKNEFGMKNQKLFWSVLREWTPHDSLKVEVPFSAI 971
>U41019-2|AAA82328.1| 518|Caenorhabditis elegans Hypothetical
protein C04E7.3 protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.0
Identities = 26/93 (27%), Positives = 36/93 (38%)
Frame = -3
Query: 744 VEWLQDPTMELELTGDALLQDPKNYHAWQHRQWAIKTFGLYEKELDFVDNLITDDVRNNS 565
VEW M L+ D Q +R+ A K + E+DF+ N N
Sbjct: 309 VEW-SGSEMALKRDNDRY-QRRSQLKTANNRELAKKMMSMERNEVDFLRNARYSKHGNLK 366
Query: 564 AWNQRYFVVNNNLGWSDLICQQEVCYTLEKINF 466
WNQ +V N + I Q+ C L +I F
Sbjct: 367 VWNQFKSLVKANKLLEEEIINQK-CQELHEIKF 398
>AF125963-4|AAD14745.2| 408|Caenorhabditis elegans F-box a protein
protein 214 protein.
Length = 408
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 273 FHNADRAVELCQALATRYDKIRSKYWNYLCERYKKYQSEQL 151
F+N + V+ Q R ++IR+ WN L +KK ++ ++
Sbjct: 168 FNNPNNQVDYIQLKLVRDEEIRNSNWNLLETSFKKMKNSRI 208
>Z75713-4|CAB00050.1| 603|Caenorhabditis elegans Hypothetical
protein T01G9.3 protein.
Length = 603
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 528 LGWSDLICQQEVCYTLEKINFVKNNESAWNYLRGLLIH 415
LGW+ Q+E+ NF+KN E +W Y LIH
Sbjct: 327 LGWA----QEELTSIALSGNFLKNFEESWTYTLKSLIH 360
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,567,853
Number of Sequences: 27780
Number of extensions: 383080
Number of successful extensions: 1032
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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