Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d20
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.61 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.9  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 330 LAFIIDVCEDAIKKKDTNCFHNADRAVEL 244
           L  ++D+CE  I + D    H +DR V L
Sbjct: 323 LNILVDMCEQDIIQNDRRTRHLSDRVVAL 351


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 288 KDTNCFHNADRAVELCQALATRYDKIRSK-YWNYLCERYKKYQSEQL 151
           +D N F  A   +++C  L  R+ KI  +  W +   +Y K Q + L
Sbjct: 202 RDHNAFEYAMAVMKMCDILHLRHTKIWLRPDWLFNLTKYGKNQIKLL 248


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 130 VCFIVITKLFTLVFLVSF 183
           VCF++   L  L F VSF
Sbjct: 227 VCFVIPIMLLFLAFFVSF 244


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 634 CFDSPLPMLP 663
           CF+ PLP LP
Sbjct: 470 CFEEPLPSLP 479


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 231 PTPDITPQLCLHCG 272
           PTP    +LCL CG
Sbjct: 178 PTPRQQEELCLVCG 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,260
Number of Sequences: 438
Number of extensions: 5313
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)