Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d17
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.9  
AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    22   5.9  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.8  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 655 MLPIIQNKLDNKNFNYLTTSESNC 726
           MLPII N L +KN      +E+NC
Sbjct: 213 MLPIIHNLLSDKN---PPNTENNC 233


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 452 KKYYQCYCCVPWS 490
           K  YQC C V W+
Sbjct: 118 KNQYQCLCGVGWT 130


>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 71  YSLNKDTFYCVHVYIFH 21
           Y + KDT   +H+Y  H
Sbjct: 79  YLIPKDTITIIHIYDLH 95


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 659 NISLGFAFITTTTRILLAAFCFGVNKIWCG 570
           N S  F  +   T  +   + F VNK  CG
Sbjct: 640 NGSFAFTVVGAATTYITIIYQFQVNKPTCG 669


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,859
Number of Sequences: 336
Number of extensions: 4366
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)