Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16d15
(437 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm... 134 6e-31
UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep: S... 116 2e-25
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 103 2e-21
UniRef50_Q4PI73 Cluster: Putative uncharacterized protein; n=4; ... 96 3e-19
UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein, puta... 92 5e-18
UniRef50_O42978 Cluster: U6 snRNP-associated protein Lsm5; n=4; ... 82 4e-15
UniRef50_A6R7U2 Cluster: Predicted protein; n=2; Eurotiomycetida... 80 2e-14
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 75 5e-13
UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep: A... 71 1e-11
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 68 8e-11
UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subuni... 67 2e-10
UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria n... 57 1e-07
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei... 53 3e-06
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 52 4e-06
UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putati... 49 5e-05
UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus ful... 46 4e-04
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 46 5e-04
UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;... 45 8e-04
UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albica... 44 0.001
UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicin... 44 0.002
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 44 0.002
UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm... 44 0.002
UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, wh... 43 0.003
UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51... 42 0.004
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 42 0.006
UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa g... 42 0.006
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 42 0.006
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 42 0.006
UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142, w... 41 0.010
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 41 0.010
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 41 0.013
UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotei... 40 0.018
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 40 0.023
UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria pa... 40 0.023
UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus ory... 40 0.023
UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is associ... 40 0.023
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 40 0.023
UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE, pu... 40 0.031
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 39 0.041
UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18... 39 0.041
UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein, pu... 39 0.054
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 39 0.054
UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotei... 39 0.054
UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein... 38 0.071
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 38 0.071
UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E, puta... 38 0.071
UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotei... 38 0.071
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei... 38 0.094
UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;... 38 0.12
UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein ... 38 0.12
UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2; ... 38 0.12
UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putati... 38 0.12
UniRef50_Q4Q7I2 Cluster: Small nuclear ribonucleoprotein polypep... 38 0.12
UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albica... 38 0.12
UniRef50_A6S1F2 Cluster: Putative uncharacterized protein; n=3; ... 38 0.12
UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2; ... 37 0.16
UniRef50_Q5CK91 Cluster: AlphaSNBP; n=2; Cryptosporidium|Rep: Al... 37 0.16
UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putati... 37 0.16
UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 37 0.16
UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homol... 37 0.22
UniRef50_A2FZR2 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 37 0.22
UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46... 37 0.22
UniRef50_Q9U7L5 Cluster: SmE protein; n=3; Trypanosomatidae|Rep:... 36 0.29
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 36 0.29
UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein NCU019... 36 0.29
UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3; ... 36 0.38
UniRef50_P40070 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 0.38
UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole ge... 36 0.50
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 36 0.50
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 36 0.50
UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2; T... 36 0.50
UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;... 36 0.50
UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella... 35 0.66
UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole... 35 0.87
UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babe... 35 0.87
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 35 0.87
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 35 0.87
UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associa... 35 0.87
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 35 0.87
UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;... 34 1.2
UniRef50_A2DLB2 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 34 1.2
UniRef50_P38203 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 1.2
UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein ... 34 1.5
UniRef50_Q7R303 Cluster: GLP_385_20544_20344; n=1; Giardia lambl... 34 1.5
UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 34 1.5
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 34 1.5
UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1; ... 34 1.5
UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1; ... 33 2.0
UniRef50_Q75CP4 Cluster: ACL125Cp; n=1; Eremothecium gossypii|Re... 33 2.0
UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 33 2.0
UniRef50_Q10013 Cluster: Probable small nuclear ribonucleoprotei... 33 2.0
UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1; ... 33 2.7
UniRef50_Q6CFJ1 Cluster: Similar to sp|O95777 Homo sapiens U6 sn... 33 2.7
UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 33 2.7
UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotei... 33 3.5
UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus lu... 33 3.5
UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 33 3.5
UniRef50_A2Y859 Cluster: Putative uncharacterized protein; n=2; ... 33 3.5
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 33 3.5
UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putati... 33 3.5
UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core bi... 33 3.5
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ... 33 3.5
UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1; ... 33 3.5
UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E hom... 32 4.7
UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F, puta... 32 4.7
UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis ... 32 4.7
UniRef50_Q96UG3 Cluster: Putative uncharacterized protein putati... 32 4.7
UniRef50_Q0CCZ6 Cluster: Predicted protein; n=1; Aspergillus ter... 32 4.7
UniRef50_UPI00004D1712 Cluster: KIAA1529 (KIAA1529), mRNA; n=1; ... 32 6.2
UniRef50_Q6MHB2 Cluster: Putative uncharacterized protein; n=1; ... 32 6.2
UniRef50_Q9Y827 Cluster: Triacylglycerol lipase; n=1; Schizosacc... 32 6.2
UniRef50_Q753M8 Cluster: AFR284Wp; n=1; Eremothecium gossypii|Re... 32 6.2
UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1; ... 32 6.2
UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1; ... 32 6.2
UniRef50_Q6WZD2 Cluster: Nogo receptor homolog 2a; n=5; Danio re... 31 8.1
UniRef50_A6PIR9 Cluster: Putative uncharacterized protein; n=1; ... 31 8.1
UniRef50_Q01J34 Cluster: OSIGBa0140O07.9 protein; n=5; Oryza sat... 31 8.1
UniRef50_Q6NNY0 Cluster: GH05922p; n=1; Drosophila melanogaster|... 31 8.1
UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G, puta... 31 8.1
UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;... 31 8.1
UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces cere... 31 8.1
UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of s... 31 8.1
UniRef50_Q6BPY4 Cluster: Debaryomyces hansenii chromosome E of s... 31 8.1
UniRef50_A3LX11 Cluster: Predicted protein; n=3; Saccharomycetac... 31 8.1
UniRef50_A2BK21 Cluster: Putative uncharacterized protein; n=1; ... 31 8.1
UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;... 31 8.1
>UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=27; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm5 - Homo sapiens (Human)
Length = 91
Score = 134 bits (325), Expect = 6e-31
Identities = 61/72 (84%), Positives = 68/72 (94%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
VDKCIGSRIHI+MK+DKE+VGTL GFDDFVNM+L+DVTE+E TPEGR+ITKLDQILLNGN
Sbjct: 18 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGN 77
Query: 58 NIAMLVPGGEMP 23
NI MLVPGGE P
Sbjct: 78 NITMLVPGGEGP 89
>UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep:
Sm-like protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 88
Score = 116 bits (279), Expect = 2e-25
Identities = 51/69 (73%), Positives = 63/69 (91%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+D+CIGS+I +IMK DKE+VG L+GFD +VNM+L+DVTEYE T EGR++TKLDQILLNGN
Sbjct: 14 IDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGN 73
Query: 58 NIAMLVPGG 32
NIA+LVPGG
Sbjct: 74 NIAILVPGG 82
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 103 bits (247), Expect = 2e-21
Identities = 43/70 (61%), Positives = 60/70 (85%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+DKC+GS+I IIMKNDKE+ GTL+GFDD++NM+L+DV +Y + +G K T+L+ L+NGN
Sbjct: 16 IDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTELNDALVNGN 75
Query: 58 NIAMLVPGGE 29
N+AMLVPGG+
Sbjct: 76 NVAMLVPGGK 85
>UniRef50_Q4PI73 Cluster: Putative uncharacterized protein; n=4;
Eukaryota|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 117
Score = 95.9 bits (228), Expect = 3e-19
Identities = 51/90 (56%), Positives = 62/90 (68%), Gaps = 15/90 (16%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVN--------------MLLDDVTEYESTPEG 101
+DKCIGS I +IMK D+E GTL GFDD+VN M+L+DVTEYE+TP+G
Sbjct: 28 IDKCIGSSIWVIMKTDREFSGTLLGFDDYVNAMIDNHSSLAVHADMVLEDVTEYETTPDG 87
Query: 100 -RKITKLDQILLNGNNIAMLVPGGEMPGES 14
+K TKL Q LLNGNNI ML+PG E P +S
Sbjct: 88 KKKKTKLGQTLLNGNNICMLIPGSEGPEDS 117
>UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein,
putative; n=3; Plasmodium|Rep: Small nuclear ribonuclear
protein, putative - Plasmodium falciparum (isolate 3D7)
Length = 101
Score = 91.9 bits (218), Expect = 5e-18
Identities = 40/69 (57%), Positives = 55/69 (79%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+DKCIGS+I I+MK DKE+VG L GFD++VNM+L+DVTEY +K+ K+ ++LLNG
Sbjct: 16 MDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKKLLLNGL 75
Query: 58 NIAMLVPGG 32
NI ++VPGG
Sbjct: 76 NITIMVPGG 84
>UniRef50_O42978 Cluster: U6 snRNP-associated protein Lsm5; n=4;
Eukaryota|Rep: U6 snRNP-associated protein Lsm5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 80
Score = 82.2 bits (194), Expect = 4e-15
Identities = 38/70 (54%), Positives = 53/70 (75%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+DKCIGS + +IMK+++E GTL GFDD+VN++L DVTEY+ T G K ++LLNGN
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG-VTEKHSEMLLNGN 68
Query: 58 NIAMLVPGGE 29
+ ML+PGG+
Sbjct: 69 GMCMLIPGGK 78
>UniRef50_A6R7U2 Cluster: Predicted protein; n=2;
Eurotiomycetidae|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 104
Score = 79.8 bits (188), Expect = 2e-14
Identities = 46/92 (50%), Positives = 59/92 (64%), Gaps = 20/92 (21%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDK--------------------EMVGTLQGFDDFVNMLLDDVTEY 119
+DKC+GS+I ++MK DK E GTL GFDD+VNM+L+DVTE+
Sbjct: 11 IDKCVGSKIWVVMKGDKGEEELGSDISPFLSSLTSNSEFSGTLLGFDDYVNMVLEDVTEF 70
Query: 118 ESTPEGRKITKLDQILLNGNNIAMLVPGGEMP 23
+ T G + TKL +ILLNGNNI ML+PGGE P
Sbjct: 71 DYT--GSQ-TKLSKILLNGNNICMLIPGGEGP 99
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 75.4 bits (177), Expect = 5e-13
Identities = 34/67 (50%), Positives = 51/67 (76%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+DK IG +I ++M NDKE GTL GFDD+VNM+L++V E+++ EG K + ++LLNG+
Sbjct: 27 IDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEEFDN--EGPKGKVIKKMLLNGS 84
Query: 58 NIAMLVP 38
+AML+P
Sbjct: 85 QVAMLIP 91
>UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep:
AGR130Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 80
Score = 70.5 bits (165), Expect = 1e-11
Identities = 31/72 (43%), Positives = 51/72 (70%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+D+ I I +++ +++E GTL GFDDFVN++++DV EY++ P+ ++LL+GN
Sbjct: 9 IDRAINQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDA-PDRAVKRHPGRMLLSGN 67
Query: 58 NIAMLVPGGEMP 23
NI +LVPGG+ P
Sbjct: 68 NITVLVPGGKPP 79
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 68.1 bits (159), Expect = 8e-11
Identities = 33/75 (44%), Positives = 53/75 (70%), Gaps = 5/75 (6%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE----GRKITK-LDQI 74
+DK I ++ I++++++E GTL GFDDFVN++L+D E+ PE K+ + ++
Sbjct: 12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRM 71
Query: 73 LLNGNNIAMLVPGGE 29
LL+GNNIA+LVPGG+
Sbjct: 72 LLSGNNIAILVPGGK 86
>UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subunit
Lsm5; n=2; Saccharomycetales|Rep: Potential RNA
processing complex subunit Lsm5 - Candida albicans
(Yeast)
Length = 119
Score = 66.9 bits (156), Expect = 2e-10
Identities = 33/67 (49%), Positives = 46/67 (68%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+D+ +G R+ ++M DKE G L GFDD+VNM+L+DVTE + G I K+ LLNG
Sbjct: 58 IDRSVGKRVRVLMTGDKEFNGKLIGFDDYVNMVLEDVTEVDG---GAPIKKM---LLNGG 111
Query: 58 NIAMLVP 38
+IAM+VP
Sbjct: 112 HIAMIVP 118
>UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 80
Score = 57.2 bits (132), Expect = 1e-07
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 122
+DKC+GS+I +IM KE G L GFDD+VNM+L++VTE
Sbjct: 21 IDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTE 59
>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
Methanosarcina acetivorans
Length = 74
Score = 52.8 bits (121), Expect = 3e-06
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMV-GTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNG 62
V K +GSRI + MK D ++ GTL+ DD++N+ L D E G K+ L ++L G
Sbjct: 7 VQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTME---IVRGEKVRSLGSVVLRG 63
Query: 61 NNIAMLVP 38
NNI ++ P
Sbjct: 64 NNIILITP 71
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 52.4 bits (120), Expect = 4e-06
Identities = 21/67 (31%), Positives = 43/67 (64%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+++ + R+ +++K+++ + GTL G+DD++NM+LDDV E KL +++ G+
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDENSENVS----RKLGTVVIRGS 63
Query: 58 NIAMLVP 38
N+ +VP
Sbjct: 64 NVVRIVP 70
>UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein, putative - Cryptosporidium parvum
Iowa II
Length = 92
Score = 48.8 bits (111), Expect = 5e-05
Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Frame = -2
Query: 217 RIHIIMKNDKEMV--GTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 44
R+ I + + K +V G +QGFD+++N++LD +E + E R+ T + Q+LL G NI+++
Sbjct: 29 RVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKKEVRRETSVGQLLLRGENISLI 88
>UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus
fulgidus|Rep: SnRNP, putative - Archaeoglobus fulgidus
Length = 75
Score = 46.0 bits (104), Expect = 4e-04
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDK-EMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNG 62
V +G I + MK ++ ++VG L+G DD++N+ L + E + K+ L +I+L G
Sbjct: 8 VKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE---EKVRSLGEIVLRG 64
Query: 61 NNIAMLVPGGE 29
NN+ ++ P E
Sbjct: 65 NNVVLIQPQEE 75
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 45.6 bits (103), Expect = 5e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQ----IL 71
+ K I RI + +++D+ MVG L FD +N++L D EY +G + +L + I+
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIM 60
Query: 70 LNGNNIAMLV 41
L G NI V
Sbjct: 61 LRGENIVTFV 70
>UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;
Eukaryota|Rep: U6 snRNP-associated protein Lsm7 -
Schizosaccharomyces pombe (Fission yeast)
Length = 113
Score = 44.8 bits (101), Expect = 8e-04
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKIT----KLDQILLNGNNIA 50
RI +++ G L+GFD +N++LDDV E PE K+T KL +++ G +
Sbjct: 35 RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLV 94
Query: 49 MLVP 38
++ P
Sbjct: 95 LIAP 98
>UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albicans
CaSMX4 U6 snRNA-associated Sm-like protein; n=2;
Saccharomycetaceae|Rep: Similar to CA3420|CaSMX4 Candida
albicans CaSMX4 U6 snRNA-associated Sm-like protein -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 88
Score = 44.4 bits (100), Expect = 0.001
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Frame = -2
Query: 202 MKNDKEMVGTLQGFDDFVNMLLDDVTEY-ESTPEGRK-ITK-LDQILLNGNNIAMLVP 38
++ +EM G LQG+D NM+L D EY PEG++ +TK D + + G+++ ++ P
Sbjct: 29 LRGAREMKGKLQGYDSHCNMILSDAVEYIYDVPEGQEPVTKNTDMVFVRGDSVILISP 86
>UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicing
factor; n=1; Ostreococcus tauri|Rep: Small Nuclear
ribonucleoprotein splicing factor - Ostreococcus tauri
Length = 110
Score = 43.6 bits (98), Expect = 0.002
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITKLDQILLNGNNIA 50
+ +R+H++ + + +VGTL+GFD N++L+D E S+ G + L ++ G+N+
Sbjct: 12 VHARVHVLTNDGRHVVGTLRGFDQVTNVILEDCAERVYSSESGVEEAPLGVYMIRGDNVC 71
Query: 49 M 47
+
Sbjct: 72 V 72
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 43.6 bits (98), Expect = 0.002
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVT-EYESTPEGRKITKLDQILLNGNNIA 50
+ I + +E G L+G+D +N+++DDV EYE +GR L ++L G NI
Sbjct: 33 VDKSIRVKFMGGREATGILKGYDQLMNLVMDDVVEEYE---DGRPTRSLGLVVLRGPNIV 89
Query: 49 MLVPGGEMPGES 14
++ P G+S
Sbjct: 90 LVSPTDGSSGKS 101
>UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=6; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm7 - Saccharomyces cerevisiae (Baker's yeast)
Length = 115
Score = 43.6 bits (98), Expect = 0.002
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = -2
Query: 220 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLV 41
S+I + + K ++G L+G+D +N++LDD EY S P+ T+L I N + + V
Sbjct: 36 SKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTEL--ISKNARKLGLTV 93
Query: 40 PGG 32
G
Sbjct: 94 IRG 96
>UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 85
Score = 42.7 bits (96), Expect = 0.003
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKI-TKLDQILLNGNNIA 50
I +I+I M+N+ E+ GTL +D+ +NM++ E S EG K KLD + L G+ I
Sbjct: 15 IAQQIYIKMRNNIELKGTLVSYDNHLNMIISKAEE-TSFQEGIKTKRKLDALYLRGDGII 73
Query: 49 MLVP 38
++ P
Sbjct: 74 LISP 77
>UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Homo
sapiens (Human)
Length = 92
Score = 42.3 bits (95), Expect = 0.004
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = -2
Query: 220 SRIHIIMKNDKEM--VGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 47
SRI + + M G + GFD+++N++LDD E S + RK +L +I+L G+NI +
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 86
Query: 46 L 44
L
Sbjct: 87 L 87
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 41.9 bits (94), Expect = 0.006
Identities = 20/59 (33%), Positives = 36/59 (61%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLV 41
+I + + D + G + GFD+++N++LDD E + RK L +ILL G+NI +++
Sbjct: 19 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRK--SLGRILLKGDNITLMM 75
>UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa
group|Rep: Predicted protein - Ajellomyces capsulatus
NAm1
Length = 171
Score = 41.9 bits (94), Expect = 0.006
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -2
Query: 232 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITK-LDQILLNGNN 56
K + + + +E+ GTL+G+D +N++LDDV E EG + T+ L I+ G
Sbjct: 89 KYMEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMRDDEGNQTTRSLGLIVARGTL 148
Query: 55 IAMLVP 38
+ ++ P
Sbjct: 149 LVLISP 154
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 41.9 bits (94), Expect = 0.006
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 47
+ S + I +K D+E G L+ FD +N++L+D E E +G +L +L+ G+NI
Sbjct: 22 LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVLIRGDNIVY 78
Query: 46 LVP 38
+ P
Sbjct: 79 ISP 81
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 41.9 bits (94), Expect = 0.006
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 47
+ RI++ M+ND+E+ G L +D +NM+L DV E +T E + T + NI M
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 46 LVPGGE 29
L G+
Sbjct: 85 LFVRGD 90
>UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_142,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 95
Score = 41.1 bits (92), Expect = 0.010
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -2
Query: 205 IMKNDKEMV-GTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 44
+++ND + G L GFD+++N++LD EY+ + K +L +ILL G NI ++
Sbjct: 35 LVENDNLRIQGKLAGFDEYLNLVLDRAVEYDRKTKATK--ELGKILLKGENIVLV 87
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 41.1 bits (92), Expect = 0.010
Identities = 22/67 (32%), Positives = 37/67 (55%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+D+ I + I +K +K + G L GFD +N+LLD E + E + L I++ G+
Sbjct: 10 LDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGEAK---GLGSIVVRGD 66
Query: 58 NIAMLVP 38
N+ M+ P
Sbjct: 67 NVVMISP 73
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 40.7 bits (91), Expect = 0.013
Identities = 17/59 (28%), Positives = 36/59 (61%)
Frame = -2
Query: 220 SRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 44
S++ I + ++ +VGTL+GFD F+N+++D+ E G + +++ GN++ M+
Sbjct: 32 SKLQIKLNANRVVVGTLRGFDQFMNLVIDNTMEV----NGNDKNDIGMVVIRGNSVVMI 86
>UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotein
G; n=16; Bilateria|Rep: Probable small nuclear
ribonucleoprotein G - Caenorhabditis elegans
Length = 77
Score = 40.3 bits (90), Expect = 0.018
Identities = 17/65 (26%), Positives = 38/65 (58%)
Frame = -2
Query: 232 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
K + + + + ++ + G L+GFD F+NM++D+ EY+ +G + L ++ GN++
Sbjct: 11 KYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK--DGGSV-NLGMTVIRGNSV 67
Query: 52 AMLVP 38
++ P
Sbjct: 68 VIMEP 72
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 39.9 bits (89), Expect = 0.023
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITKLDQILLNG 62
++ I + II + + +GTL+GFD +N+++D+ E ST G + L ++ G
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIRG 63
Query: 61 NNIAML 44
+NIA++
Sbjct: 64 DNIAVI 69
>UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria
parva|Rep: Sm protein, putative - Theileria parva
Length = 84
Score = 39.9 bits (89), Expect = 0.023
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2
Query: 214 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 104
I++ KN +E+VG LQ FD+ NM+L +VTE +T E
Sbjct: 22 IYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTVE 58
>UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 122
Score = 39.9 bits (89), Expect = 0.023
Identities = 17/61 (27%), Positives = 38/61 (62%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVP 38
R+ + +++++G L+G+D F+N++LD+ +E G K+ + +++ GN++ ML
Sbjct: 4 RVFCQLNGNRKVIGILRGYDVFMNIVLDEA--FEEKQGGEKVA-IGMVVIRGNSVVMLEY 60
Query: 37 G 35
G
Sbjct: 61 G 61
>UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins; n=1;
Aspergillus niger|Rep: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins -
Aspergillus niger
Length = 105
Score = 39.9 bits (89), Expect = 0.023
Identities = 17/58 (29%), Positives = 37/58 (63%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 44
R+ + +++++G L+G+D F+N++LD+ +E G K+ + I++ GN++ ML
Sbjct: 26 RVFCQLNGNRKVIGILRGYDVFMNIVLDEA--FEEKQGGEKVA-IGMIVIRGNSVVML 80
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 39.9 bits (89), Expect = 0.023
Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITKLDQILLNG 62
++ I + +I + + +VGTL+GFD +N++LD+ E S+ +G + L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 61 NNIAML 44
+N+A++
Sbjct: 65 DNVAVI 70
>UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE,
putative; n=12; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein SmE, putative - Aspergillus clavatus
Length = 95
Score = 39.5 bits (88), Expect = 0.031
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = -2
Query: 178 GTLQGFDDFVNMLLDDVTEYE--STPEGRKITKLDQILLNGNNIAML 44
G ++GFD+F+N+++DD E + + K L QILL G+N++++
Sbjct: 45 GKIRGFDEFMNLVVDDAVEVRMATKTDEEKRRPLGQILLKGDNVSLI 91
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 39.1 bits (87), Expect = 0.041
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+++ + S + + +K +E GTL G+D +N++L D E ++ G + K+ +++ G+
Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQN---GEVVRKVGSVVIRGD 65
Query: 58 NIAML--VPGGE 29
+ + PGGE
Sbjct: 66 TVVFVSPAPGGE 77
>UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 92
Score = 39.1 bits (87), Expect = 0.041
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = -2
Query: 178 GTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 44
G + GFD+++N++LDD E + RK L +I+L G+NI +L
Sbjct: 45 GCIIGFDEYMNLVLDDAEEVHMKTKNRK--PLGRIMLKGDNITLL 87
>UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein,
putative (Small nuclear ribonucleoprotein (LSM7),
putative); n=2; Pezizomycotina|Rep: U6 snrna-associated
sm-like protein, putative (Small nuclear
ribonucleoprotein (LSM7), putative) - Aspergillus
fumigatus (Sartorya fumigata)
Length = 134
Score = 38.7 bits (86), Expect = 0.054
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQI 74
+ K + + + +E+ G L+G+D +N++LDDV E ITKLD++
Sbjct: 55 LSKYMDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRGKSLNDITKLDEV 109
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 38.7 bits (86), Expect = 0.054
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = -2
Query: 202 MKNDKEMVGTLQGFDDFVNMLLDDVTEY-ESTPEGRKITKLDQILLNGNNIAML 44
+KN +E VG L+ D +N++L D TEY E T + + K ++L+ G+NI +
Sbjct: 24 LKNGEEYVGRLEQSDGTMNLVLKDCTEYREGTSD--PVAKYGRVLIRGSNILFI 75
>UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotein
G; n=7; Ascomycota|Rep: Probable small nuclear
ribonucleoprotein G - Schizosaccharomyces pombe (Fission
yeast)
Length = 77
Score = 38.7 bits (86), Expect = 0.054
Identities = 16/63 (25%), Positives = 38/63 (60%)
Frame = -2
Query: 232 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
K + ++ + + +++ G L+G+D F+N++L+D E +G K+ K+ + + GN++
Sbjct: 11 KYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLED--SIEEKVDGEKV-KIGSVAIRGNSV 67
Query: 52 AML 44
M+
Sbjct: 68 IMI 70
>UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 85
Score = 38.3 bits (85), Expect = 0.071
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = -2
Query: 232 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
K + ++ I + ++ + G L+GFD F+N+ L D E S E +I +++ GN+I
Sbjct: 13 KLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEI---GMVIIRGNSI 69
Query: 52 AMLVP 38
++ P
Sbjct: 70 LLMEP 74
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 38.3 bits (85), Expect = 0.071
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YESTPEGRKITKLDQILLNG 62
++ + + + II + + VGTL+GFD +N++LD+ E S G + L ++ G
Sbjct: 71 LESYVNTTVSIITADGRNFVGTLKGFDQTINIILDESHERVYSMNAGIEQVVLGLHIIRG 130
Query: 61 NNIAML 44
+N+A++
Sbjct: 131 DNVAVI 136
>UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E,
putative; n=1; Tetrahymena thermophila SB210|Rep: Small
nuclear ribonucleoprotein E, putative - Tetrahymena
thermophila SB210
Length = 140
Score = 38.3 bits (85), Expect = 0.071
Identities = 17/65 (26%), Positives = 39/65 (60%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+ K + +I + + ++ G + GFD+++NM+LD+ +E + ++ ++ +ILL G
Sbjct: 20 LQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVDCKTNQKR--EIGRILLKGE 77
Query: 58 NIAML 44
NI ++
Sbjct: 78 NITLI 82
>UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotein
G; n=14; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein G - Drosophila melanogaster (Fruit
fly)
Length = 76
Score = 38.3 bits (85), Expect = 0.071
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
V K + R+ + + + + G L+GFD F+N++LDD E + K + +++ GN
Sbjct: 9 VKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTV--EECKDNTK-NNIGMVVIRGN 65
Query: 58 NIAML 44
+I M+
Sbjct: 66 SIVMV 70
>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
ribonucleoprotein E - Ostreococcus tauri
Length = 101
Score = 37.9 bits (84), Expect = 0.094
Identities = 15/58 (25%), Positives = 35/58 (60%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 44
++ + + ++ + G L+GFD F+N++LDD T +T + T + +++ GN++ +
Sbjct: 34 KLRLRLNGNRSVTGILRGFDQFLNLVLDDSTNDTTTEK----TPMGMVVVRGNSVVSM 87
>UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 89
Score = 37.5 bits (83), Expect = 0.12
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -2
Query: 178 GTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 44
GTL GFD ++N++L D E R+ K+ ILL G NI+++
Sbjct: 41 GTLSGFDQYINLVLTDTEEVYLKTNTRR--KIGTILLKGENISVI 83
>UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein G;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein G - Entamoeba histolytica HM-1:IMSS
Length = 81
Score = 37.5 bits (83), Expect = 0.12
Identities = 16/55 (29%), Positives = 34/55 (61%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
RI + + + ++G L G+D+++N++LD+ + S P+ K + I++ GN+I
Sbjct: 15 RILVKIHGKRSIIGVLSGYDEYMNLVLDEAYD-ASNPDTDKHIPIGMIMILGNSI 68
>UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 37.5 bits (83), Expect = 0.12
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = -2
Query: 169 QGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVPGGE 29
+GFD+++N++LD+ E + RK L +ILL G+NI +++ G+
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRK--SLGRILLKGDNITLMMNTGK 141
>UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putative;
n=8; Eukaryota|Rep: Small nuclear ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 83
Score = 37.5 bits (83), Expect = 0.12
Identities = 16/61 (26%), Positives = 37/61 (60%)
Frame = -2
Query: 232 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
K + R+ I + ++++VG L+G+D F+N++LD+ E + + + +++ GN+I
Sbjct: 16 KFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKDEQ----IDIGVVVIRGNSI 71
Query: 52 A 50
+
Sbjct: 72 S 72
>UniRef50_Q4Q7I2 Cluster: Small nuclear ribonucleoprotein
polypeptide e, putative; n=4; Trypanosomatidae|Rep:
Small nuclear ribonucleoprotein polypeptide e, putative
- Leishmania major
Length = 86
Score = 37.5 bits (83), Expect = 0.12
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = -2
Query: 178 GTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVPGG 32
G L G+D+F+N++L D T E+ K +L +ILL +N+ ++ P G
Sbjct: 39 GNLLGYDEFMNVVLGDTT--ETNLRNSKSYRLGKILLRSDNVGVIYPIG 85
>UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albicans
CaLSM6; n=3; Ascomycota|Rep: Similar to CA5853|CaLSM6
Candida albicans CaLSM6 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 84
Score = 37.5 bits (83), Expect = 0.12
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+ + IGS + + + N E +G LQ D ++N++LD+ E+ + R + + GN
Sbjct: 21 LSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQAR---NYGDVFIRGN 77
Query: 58 N 56
N
Sbjct: 78 N 78
>UniRef50_A6S1F2 Cluster: Putative uncharacterized protein; n=3;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 690
Score = 37.5 bits (83), Expect = 0.12
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = -2
Query: 223 GSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 44
G + + +K+ + + G L D ++N+ L +V + ++P+G K T+L +I + GNNI L
Sbjct: 13 GHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQ--TSPDGDKFTRLPEIYVKGNNIKYL 70
>UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2;
n=1; Guillardia theta|Rep: Small nuclear
ribonucleoprotein SM D2 - Guillardia theta (Cryptomonas
phi)
Length = 82
Score = 37.1 bits (82), Expect = 0.16
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = -2
Query: 214 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY----ESTPEGRKITK--LDQILLNGNNI 53
+ II++N+K M+G + +D +N+LL++V E E+ E KI + ++ L G+NI
Sbjct: 17 VMIILRNNKRMIGKIINYDKHLNLLLENVNEIKFVGENFSELIKIKSKFIPKVFLRGDNI 76
Query: 52 AMLV 41
+++
Sbjct: 77 VLIL 80
>UniRef50_Q5CK91 Cluster: AlphaSNBP; n=2; Cryptosporidium|Rep:
AlphaSNBP - Cryptosporidium hominis
Length = 377
Score = 37.1 bits (82), Expect = 0.16
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFD-DFVNMLLDDVTEYESTPEG----RKITKLDQI 74
V + IGS+I II +NDK G L D D + L DV +E+ P G T + I
Sbjct: 2 VHEYIGSKITIISRNDKRYEGVLHSIDVDKSTITLKDVRYFENGPNGAPGPASSTVFEMI 61
Query: 73 LLNGNNIAML 44
+ G++I L
Sbjct: 62 VFRGSDITDL 71
>UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putative;
n=2; Theileria|Rep: Small nuclear ribonucleoprotein,
putative - Theileria parva
Length = 91
Score = 37.1 bits (82), Expect = 0.16
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = -2
Query: 223 GSRIHIIM--KNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIA 50
G+R+ I + + + ++ GT++GFD+++NM+LD+ TE +K + +ILL G+ +
Sbjct: 26 GTRVQIWLFDQPNTKIEGTIRGFDEYMNMVLDNATEVHVKKNVKK--DVGRILLKGDCMT 83
Query: 49 ML 44
++
Sbjct: 84 LI 85
>UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 93
Score = 37.1 bits (82), Expect = 0.16
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVP 38
R+H+ + M G L GFD+++N++L D YE P+ L LL G + M+ P
Sbjct: 30 RVHLNDNSKMYMEGNLLGFDEYMNLVLGD--SYEVYPKENTRVPLGTSLLRGECVGMVHP 87
>UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homolog,
U6 small nuclear RNA associated; n=3; Homo/Pan/Gorilla
group|Rep: PREDICTED: similar to LSM3 homolog, U6 small
nuclear RNA associated - Homo sapiens
Length = 101
Score = 36.7 bits (81), Expect = 0.22
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 104
RI + M+ND+E+ G L +D +NM+L DV E +T E
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEETVTTIE 64
>UniRef50_A2FZR2 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 89
Score = 36.7 bits (81), Expect = 0.22
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE 116
IG ++ I ++N++E+ GTL D F N++L+D E +
Sbjct: 20 IGHKVFIKLENNRELEGTLMSLDQFGNLVLNDTVELQ 56
>UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46;
Eukaryota|Rep: Small nuclear ribonucleoprotein G - Homo
sapiens (Human)
Length = 76
Score = 36.7 bits (81), Expect = 0.22
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = -2
Query: 232 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
K + ++ + + + + G L+GFD F+N+++D+ E ++ + I +++ GN+I
Sbjct: 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI---GMVVIRGNSI 67
Query: 52 AML 44
ML
Sbjct: 68 IML 70
>UniRef50_Q9U7L5 Cluster: SmE protein; n=3; Trypanosomatidae|Rep:
SmE protein - Leptomonas collosoma
Length = 94
Score = 36.3 bits (80), Expect = 0.29
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -2
Query: 178 GTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 44
G L G+D+F+N++L D TE S + ++ T L +ILL +N+ ++
Sbjct: 47 GNLLGYDEFMNVVLGDATETNS--KTKESTHLGKILLRSDNVGVV 89
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 36.3 bits (80), Expect = 0.29
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 104
+ ++++ M+N++E+ G L FD +NM+L D E +T E
Sbjct: 26 LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 66
>UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein
NCU01930.1; n=2; Sordariomycetes|Rep: Putative
uncharacterized protein NCU01930.1 - Neurospora crassa
Length = 132
Score = 36.3 bits (80), Expect = 0.29
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -2
Query: 232 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 122
K + RI + +E+ GTL+G+D +N++LDDV E
Sbjct: 60 KYMDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQE 96
>UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3;
Dikarya|Rep: Putative uncharacterized protein - Ustilago
maydis (Smut fungus)
Length = 136
Score = 35.9 bits (79), Expect = 0.38
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = -2
Query: 193 DKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVP 38
D + G + GFD+F+N+ L D E + + +++ +L +ILL G+NI P
Sbjct: 34 DFRIEGKIIGFDEFMNVTLADAEEVWTKKDNKRV-ELGRILLKGDNIVGAPP 84
>UniRef50_P40070 Cluster: U6 snRNA-associated Sm-like protein LSm4;
n=3; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm4 - Saccharomyces cerevisiae (Baker's yeast)
Length = 187
Score = 35.9 bits (79), Expect = 0.38
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = -2
Query: 223 GSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY--------ESTPEGRKITKLDQILL 68
G ++ I +KN + + G L D+++N+ L +VTEY E E K KL++I +
Sbjct: 12 GQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYI 71
Query: 67 NGNNIAML 44
G I +
Sbjct: 72 RGTFIKFI 79
>UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole
genome shotgun sequence; n=8; Eukaryota|Rep: Chromosome
chr13 scaffold_210, whole genome shotgun sequence -
Vitis vinifera (Grape)
Length = 113
Score = 35.5 bits (78), Expect = 0.50
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = -2
Query: 232 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKIT-----KLDQILL 68
K + + + + +++ GTL+G+D +N++LD+ E+ P+ + T +L I+
Sbjct: 27 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKTTDQTRRLGLIVC 86
Query: 67 NGNNIAMLVP 38
G + ++ P
Sbjct: 87 RGTAVMLVSP 96
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 35.5 bits (78), Expect = 0.50
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY-ESTPEGRKIT----KLDQI 74
++K + +++ +E+ G L+G D N++LDD EY + + + K+T L +
Sbjct: 17 LNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKLTGEKRNLGLL 76
Query: 73 LLNGNNIAMLVP 38
+ G ++ ++ P
Sbjct: 77 VARGTSVTVVYP 88
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 35.5 bits (78), Expect = 0.50
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -2
Query: 202 MKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVP 38
+K K + G L FD +N++LDD E + E +L ++L+ G+++ ++ P
Sbjct: 19 LKTGKTLRGRLVSFDGHLNLVLDDCVEIDEDSE----VRLGRVLIRGDSVTLISP 69
>UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2;
Thermoprotei|Rep: Small nuclear ribonucleoprotein -
Cenarchaeum symbiosum
Length = 106
Score = 35.5 bits (78), Expect = 0.50
Identities = 14/87 (16%), Positives = 40/87 (45%)
Frame = -2
Query: 304 VRRKKMTQSSXXXXXXXXXXXLVDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVT 125
+RR+ ++ + K + + +KN+ E G ++ D ++N+++ D
Sbjct: 17 IRRRSPSEYPVSQSNAKRPLTALQKSTKKAVTVRLKNETEYKGKMENVDSYMNLIMTDAE 76
Query: 124 EYESTPEGRKITKLDQILLNGNNIAML 44
E+ + + + ++++ GNN+ +
Sbjct: 77 EFH---DSKVVANYGRVIVRGNNVLFI 100
>UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;
Saccharomycetaceae|Rep: Small nuclear ribonucleoprotein
E - Saccharomyces cerevisiae (Baker's yeast)
Length = 94
Score = 35.5 bits (78), Expect = 0.50
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 5/50 (10%)
Frame = -2
Query: 178 GTLQGFDDFVNMLLDDVTEYE-STPEGR----KITKLDQILLNGNNIAML 44
G + GFD+F+N+++D+ E ++ +G+ K T L +ILL G+NI ++
Sbjct: 41 GKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLI 90
>UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 101
Score = 35.1 bits (77), Expect = 0.66
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY--ESTPEGRKITK 86
+ S+I I ++ + G ++GFD N++L+DVTE E T + R + K
Sbjct: 27 LNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKK 75
>UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7390,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 268
Score = 34.7 bits (76), Expect = 0.87
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY-------ESTPEGRKITKLDQILL 68
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 20 IDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLL 79
Query: 67 NGNNIAMLVPGGEMPGES 14
G N+ + G P ++
Sbjct: 80 RGENLVSMTVEGPPPKDA 97
>UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babesia
bovis|Rep: Sm domain containing protein - Babesia bovis
Length = 159
Score = 34.7 bits (76), Expect = 0.87
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYEST----PEGRKI---TKLDQILLNGN 59
R+ + +K+ ++ VGT FD +N++L D E+ T P+ +K+ L I+L G
Sbjct: 15 RVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVELKRTLGFIMLRGE 74
Query: 58 NI 53
NI
Sbjct: 75 NI 76
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 34.7 bits (76), Expect = 0.87
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEG-RKI-TK--LDQILLNGN 59
I R+ I + + + +VGT FD +N++L + EY +G +I TK L I++ G+
Sbjct: 11 IDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVRGD 70
Query: 58 NIAML 44
NI L
Sbjct: 71 NIISL 75
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 34.7 bits (76), Expect = 0.87
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 47
IG ++ + +++ E+ G L+ FD VN+LL+D E +G + K +++ G N+
Sbjct: 20 IGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDA---EEIIDG-NVYKRGTMVVRGENVLF 75
Query: 46 LVP 38
+ P
Sbjct: 76 ISP 78
>UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associated
protein N; n=94; Eukaryota|Rep: Small nuclear
ribonucleoprotein-associated protein N - Homo sapiens
(Human)
Length = 240
Score = 34.7 bits (76), Expect = 0.87
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYE-------STPEGRKITKLDQILL 68
I R+ I+++ + +GT + FD +N++L D E+ PE + L +LL
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
Query: 67 NGNNIAMLVPGGEMPGES 14
G N+ + G P ++
Sbjct: 73 RGENLVSMTVEGPPPKDT 90
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 34.7 bits (76), Expect = 0.87
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE--YESTPE--GRKITKLDQILLNGN 59
+ R++I ++ + +VGTLQ FD N++L D E Y+ E + + + + G+
Sbjct: 12 LDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGD 71
Query: 58 NIAML 44
+ ++
Sbjct: 72 TVTLI 76
>UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein lsm-1 - Caenorhabditis elegans
Length = 125
Score = 34.3 bits (75), Expect = 1.2
Identities = 13/60 (21%), Positives = 34/60 (56%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 47
+ ++ +++++ ++++G L+ D F N++L+DV E + T +L+ G N+ +
Sbjct: 18 LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQGFMLIRGENVEL 77
>UniRef50_A2DLB2 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 76
Score = 34.3 bits (75), Expect = 1.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 211 HIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
H+++ +++GTL D N++L D E + G ++ K I + GN +
Sbjct: 20 HVVLSTGSQLIGTLCTIDALFNLVLRDAVEMSN---GNEVGKYQSIFIRGNQV 69
>UniRef50_P38203 Cluster: U6 snRNA-associated Sm-like protein LSm2;
n=28; Fungi/Metazoa group|Rep: U6 snRNA-associated
Sm-like protein LSm2 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 95
Score = 34.3 bits (75), Expect = 1.2
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVT 125
+ + + +KND E+ GTLQ D F+N+ LD+++
Sbjct: 11 VDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNIS 44
>UniRef50_UPI0000D8A096 Cluster: small nuclear ribonucleoprotein
(snrnp),putative; n=1; Eimeria tenella|Rep: small
nuclear ribonucleoprotein (snrnp),putative - Eimeria
tenella
Length = 125
Score = 33.9 bits (74), Expect = 1.5
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 47
+G I + K GTL+ +D +NML+ VT T + K+ L+Q+ + G+ + M
Sbjct: 18 LGHTITVETKTGSLYRGTLENAEDNMNMLIQGVT---VTHKDGKVLSLEQVYIRGSQVQM 74
Query: 46 LV 41
++
Sbjct: 75 VI 76
>UniRef50_Q7R303 Cluster: GLP_385_20544_20344; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_385_20544_20344 - Giardia lamblia
ATCC 50803
Length = 66
Score = 33.9 bits (74), Expect = 1.5
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVT 125
IGSR+ +I ++ GT++ D++ N+LL DV+
Sbjct: 11 IGSRVELIFTTGDKLTGTIEATDEYENILLADVS 44
>UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 158
Score = 33.9 bits (74), Expect = 1.5
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+ K I SR+ +++ + + VG + FD N++L D EY RK +L +
Sbjct: 9 LSKFINSRVKVVISDHRYFVGQMLAFDTHSNIVLKDCEEYRRL-NRRKAGELQEA---KR 64
Query: 58 NIAMLVPGGE 29
NI +++ GE
Sbjct: 65 NIGLMILRGE 74
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 33.9 bits (74), Expect = 1.5
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 122
++K G R+ I + + ++GT+ GFD F+N++LD E
Sbjct: 18 LNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCKE 56
>UniRef50_A7TI36 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 193
Score = 33.9 bits (74), Expect = 1.5
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -2
Query: 223 GSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES 113
G +I I +KN + + G L D+++N+ L DV +Y+S
Sbjct: 12 GQKITIELKNGETIKGVLTNVDNWMNLTLSDVIQYDS 48
>UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 129
Score = 33.5 bits (73), Expect = 2.0
Identities = 12/61 (19%), Positives = 32/61 (52%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 47
+ ++ +++++ ++ +G ++ FD F N++L D E + L + G+N+ +
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVI 68
Query: 46 L 44
L
Sbjct: 69 L 69
>UniRef50_Q75CP4 Cluster: ACL125Cp; n=1; Eremothecium gossypii|Rep:
ACL125Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 106
Score = 33.5 bits (73), Expect = 2.0
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEG 101
+G R+ ++ + +V TL+GFD N+LL DV + +T EG
Sbjct: 9 LGRRVVVVTTDGGCLVATLEGFDKTANLLLSDVRQ-RATGEG 49
>UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 80
Score = 33.5 bits (73), Expect = 2.0
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = -2
Query: 202 MKNDKEMVGTLQGFDDFVNMLL---DDVTEYESTPEGRKITKLDQIL 71
++N+K + GTL+ FD +N+ L +DV+E + P G+ + + D IL
Sbjct: 24 LRNNKTVQGTLKDFDIHMNLTLENAEDVSEEKPNPIGKVLLRGDNIL 70
>UniRef50_Q10013 Cluster: Probable small nuclear ribonucleoprotein
Sm D1; n=10; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D1 - Caenorhabditis elegans
Length = 126
Score = 33.5 bits (73), Expect = 2.0
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = -2
Query: 214 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLV 41
++I +KN ++ GT+ G D +N L V+ T + ++ KLD + + GNNI ++
Sbjct: 15 VNIELKNGTQVSGTIMGVDVAMNTHLRAVS---MTVKNKEPVKLDTLSIRGNNIRYII 69
>UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 73
Score = 33.1 bits (72), Expect = 2.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 119
++K I + + +E++G L+GFD N++LD+ EY
Sbjct: 24 LNKFNNKEIKVKLCGGREVIGILRGFDAVTNLVLDETVEY 63
>UniRef50_Q6CFJ1 Cluster: Similar to sp|O95777 Homo sapiens U6
snRNA-associated Sm-like protein LSm8; n=1; Yarrowia
lipolytica|Rep: Similar to sp|O95777 Homo sapiens U6
snRNA-associated Sm-like protein LSm8 - Yarrowia
lipolytica (Candida lipolytica)
Length = 97
Score = 33.1 bits (72), Expect = 2.7
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTP-EGRKITKLDQILLNGNNIA 50
I + +I + + ++G LQG+D N++L + E TP E ++ L +L G+ IA
Sbjct: 8 INKPVTVITTDGRLILGILQGYDQATNVILSNTRERVITPDEPTEVVDLGLYMLRGDCIA 67
>UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Caldivirga maquilingensis IC-167|Rep: Like-Sm
ribonucleoprotein, core - Caldivirga maquilingensis
IC-167
Length = 86
Score = 33.1 bits (72), Expect = 2.7
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
+ + + +K + + GTL+ D +N++LDD E + T + I + ++L+ GN +
Sbjct: 20 VNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEELD-TRTNQVIVRYGKVLIRGNQV 76
>UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein E - Guillardia theta (Cryptomonas phi)
Length = 78
Score = 32.7 bits (71), Expect = 3.5
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = -2
Query: 214 IHIIMK--NDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
+ II K ND + G L GFD+F+N+++++ TE + + + L +L+ G++I
Sbjct: 18 VTIIFKGSNDYILEGNLIGFDEFMNLVIENTTEKK---DSLIVRDLGYVLIKGDSI 70
>UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 126
Score = 32.7 bits (71), Expect = 3.5
Identities = 13/61 (21%), Positives = 31/61 (50%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 47
+ R+ + +++ ++GTL+ FD F N++L+ E + L ++ G N+ +
Sbjct: 17 LDKRLLVALRDGSNIIGTLRSFDQFANIVLESAVERIIVGKMFSDIPLGLYIVRGENVVL 76
Query: 46 L 44
+
Sbjct: 77 M 77
>UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 100
Score = 32.7 bits (71), Expect = 3.5
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = -2
Query: 214 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 119
+ + + +E+ GTL+G+D +N++LD+ E+
Sbjct: 18 VRVKLSGGREVTGTLKGYDQLLNLVLDEAIEH 49
>UniRef50_A2Y859 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 32.7 bits (71), Expect = 3.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 122
++ + I +I + + +VGTL+GFD N++LD+ E
Sbjct: 8 LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 32.7 bits (71), Expect = 3.5
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Frame = -2
Query: 214 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE-YE-STPEGRKIT------KLDQILLNGN 59
I + K D+E++G L +D+ +NM+L +V E Y+ S E + T LD + + G+
Sbjct: 5 IFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETVKKMERNLDMVFVRGD 64
Query: 58 NIAML 44
+I ++
Sbjct: 65 SIILV 69
>UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putative;
n=6; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 113
Score = 32.7 bits (71), Expect = 3.5
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -2
Query: 178 GTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
GT++ + +N+LL D T+ T G K TK+D + + G+NI
Sbjct: 30 GTVEELQNNMNVLLKDATK---TARGGKETKMDSVFVRGSNI 68
>UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core
binding protein B/B'; n=1; Candida albicans|Rep:
Potential spliceosomal snRNA Sm core binding protein
B/B' - Candida albicans (Yeast)
Length = 110
Score = 32.7 bits (71), Expect = 3.5
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEG----RKITKLDQILLNGN 59
I RI II +++ +GTL FD +N++L D E T + +K T +++ +
Sbjct: 5 INFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQLKKHTPNVELVYDKR 64
Query: 58 NIAMLVPGGE 29
N+ +++ G+
Sbjct: 65 NLGLIILRGD 74
>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 134
Score = 32.7 bits (71), Expect = 3.5
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 122
+ RI + ++ +++ GTL+GFD F+N+++D+ E
Sbjct: 60 LDKRIAVNIQGGRKIQGTLRGFDMFLNLVVDEAIE 94
>UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 234
Score = 32.7 bits (71), Expect = 3.5
Identities = 9/35 (25%), Positives = 24/35 (68%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 122
+ ++ ++++++KE +G L+ +D F N++L + E
Sbjct: 101 VDKKVDVLLRDEKEYIGILRSYDQFANLVLTECHE 135
>UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E
homolog; n=2; Bigelowiella natans|Rep: Small nucleolar
ribonucleoprotein E homolog - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 71
Score = 32.3 bits (70), Expect = 4.7
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = -2
Query: 214 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
I I +KN + GTL+GFD F+N++L E + ++ D +++ GN+I
Sbjct: 18 IQIQLKNKLCLKGTLRGFDQFLNIVL------EKSSYSKESNYFDILIVRGNSI 65
>UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 94
Score = 32.3 bits (70), Expect = 4.7
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = -2
Query: 232 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
K +G + + +K E G L+ FD ++N+ L++ E+E+ K T IL+ NN+
Sbjct: 30 KLVGQNVFVTLKWGMEYKGFLKSFDSYMNIELENAEEWENGV--MKGTLGGTILIRCNNV 87
>UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 81
Score = 32.3 bits (70), Expect = 4.7
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDV---TEYESTP 107
++ I+ D+E+ G L GFD F+N+ + D T Y+ P
Sbjct: 22 KVKIMSNKDREVSGILTGFDHFMNLTIRDAQIKTPYDKAP 61
>UniRef50_Q96UG3 Cluster: Putative uncharacterized protein putative
LSM4; n=1; Kluyveromyces lactis|Rep: Putative
uncharacterized protein putative LSM4 - Kluyveromyces
lactis (Yeast) (Candida sphaerica)
Length = 183
Score = 32.3 bits (70), Expect = 4.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 223 GSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYES 113
G +H+ +KN + + GTL D+++N+ L +VT S
Sbjct: 12 GQTMHVELKNGETVEGTLSDVDNWMNLTLSNVTHVAS 48
>UniRef50_Q0CCZ6 Cluster: Predicted protein; n=1; Aspergillus
terreus NIH2624|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 867
Score = 32.3 bits (70), Expect = 4.7
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -2
Query: 145 MLLDDVTEYESTPEGRKITKLDQILLNGN-NIAMLVPG 35
+++D+ E+E+ E +KI K+DQ L+ G N+ +L+ G
Sbjct: 545 VVVDEECEHEAQKEKQKIAKMDQALVRGRWNLELLIQG 582
>UniRef50_UPI00004D1712 Cluster: KIAA1529 (KIAA1529), mRNA; n=1;
Xenopus tropicalis|Rep: KIAA1529 (KIAA1529), mRNA -
Xenopus tropicalis
Length = 489
Score = 31.9 bits (69), Expect = 6.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 7 IAMILQAFHHRAPTSLCYCHLIEFD 81
I M+L FHH P +L +CHL+ D
Sbjct: 414 IGMLLVDFHHTNPVALSFCHLLLHD 438
>UniRef50_Q6MHB2 Cluster: Putative uncharacterized protein; n=1;
Bdellovibrio bacteriovorus|Rep: Putative uncharacterized
protein - Bdellovibrio bacteriovorus
Length = 242
Score = 31.9 bits (69), Expect = 6.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 43 PTSLCYCHLIE-FDPT*LFFVLLVSIRIR*HRLVT 144
P CYCH IE FDP F +L+ I +R R+ T
Sbjct: 29 PGKACYCHAIEKFDPQISFVILIHPIEVR-RRIAT 62
>UniRef50_Q9Y827 Cluster: Triacylglycerol lipase; n=1;
Schizosaccharomyces pombe|Rep: Triacylglycerol lipase -
Schizosaccharomyces pombe (Fission yeast)
Length = 483
Score = 31.9 bits (69), Expect = 6.2
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -2
Query: 178 GTLQGFDDFVNMLLDDVTEYESTPE---GRKITKLDQILLNGNNIAMLVPGG 32
GT + D+F+ +L +T E TP+ KIT+ ++ L N A+++ GG
Sbjct: 95 GTKKLIDEFIQEVLMCLTYLEETPDLSLDEKITEFSRLKLTTGNTALILSGG 146
>UniRef50_Q753M8 Cluster: AFR284Wp; n=1; Eremothecium gossypii|Rep:
AFR284Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 1103
Score = 31.9 bits (69), Expect = 6.2
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -1
Query: 320 IPRNLRTQKKNDAKFITESKHVTASGTC*QMHWFPHSYHNEKRQRNGWNSTRI 162
+PR L +K + + F+TE+ H SG+C M H+ R +G ST I
Sbjct: 411 LPRELFEKKHHVSPFVTEN-HAANSGSCSSMSDHERYLHHIARYHDGETSTNI 462
>UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 134
Score = 31.9 bits (69), Expect = 6.2
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -2
Query: 229 CIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIA 50
CI + + ++ D+E+ G L +D N++L DV E E + + ++
Sbjct: 17 CIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEEEEEDQEPRVRTVKKQSE 76
Query: 49 ML-VPGGEMPGES 14
ML V G E+ G S
Sbjct: 77 MLFVRGREVSGNS 89
>UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 157
Score = 31.9 bits (69), Expect = 6.2
Identities = 15/66 (22%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 47
+ + + +KND ++ G L+ D ++N+ LDD+ E + ++ + + + G+ +
Sbjct: 70 VDHEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEEL-KYPHLSSVKNVFIRGSVVRY 128
Query: 46 L-VPGG 32
+ +PGG
Sbjct: 129 VHLPGG 134
>UniRef50_Q6WZD2 Cluster: Nogo receptor homolog 2a; n=5; Danio
rerio|Rep: Nogo receptor homolog 2a - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 478
Score = 31.5 bits (68), Expect = 8.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 169 VEFQPFLCRFSL*YECGNQCICQQVPEAVTC 261
+EF LC L + C CIC P V+C
Sbjct: 8 LEFLLVLCGLELSWSCPRHCICYMAPSTVSC 38
>UniRef50_A6PIR9 Cluster: Putative uncharacterized protein; n=1;
Shewanella sediminis HAW-EB3|Rep: Putative
uncharacterized protein - Shewanella sediminis HAW-EB3
Length = 321
Score = 31.5 bits (68), Expect = 8.1
Identities = 24/94 (25%), Positives = 38/94 (40%)
Frame = -1
Query: 425 HTMSSNSKIQIKSCF*VLCFMKLNNLQVDCHYSK*IPRNLRTQKKNDAKFITESKHVTAS 246
H + SN + ++K + F K+ + Q Y+ + + N F +KH A
Sbjct: 73 HLLLSNPEFELKQLPSISAFQKMLDQQTS--YNHVMGAHPYISSDN-ISFDKINKH--AD 127
Query: 245 GTC*QMHWFPHSYHNEKRQRNGWNSTRIR*FCKH 144
+ W H + N RQR WN T I +H
Sbjct: 128 NAAQMIRWITHYHSNLTRQRENWNPTFITPLVEH 161
>UniRef50_Q01J34 Cluster: OSIGBa0140O07.9 protein; n=5; Oryza
sativa|Rep: OSIGBa0140O07.9 protein - Oryza sativa
(Rice)
Length = 136
Score = 31.5 bits (68), Expect = 8.1
Identities = 13/61 (21%), Positives = 32/61 (52%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 47
+ ++ +++++ ++++GTL FD F N++L E E L ++ G N+ +
Sbjct: 20 LDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGELYCDVPLGLYVIRGENVVL 79
Query: 46 L 44
+
Sbjct: 80 I 80
>UniRef50_Q6NNY0 Cluster: GH05922p; n=1; Drosophila
melanogaster|Rep: GH05922p - Drosophila melanogaster
(Fruit fly)
Length = 93
Score = 31.5 bits (68), Expect = 8.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 231 LSTSSRGSNVFGFGNELCVIFFLRTKISWNLFTVMT 338
++T+ G +FGFG LCV K++ LF V+T
Sbjct: 17 VATTKHGQQLFGFGASLCVFIMYAVKLA-TLFRVIT 51
>UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G,
putative; n=2; Piroplasmida|Rep: Small nuclear
ribonucleoprotein G, putative - Theileria parva
Length = 86
Score = 31.5 bits (68), Expect = 8.1
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = -2
Query: 202 MKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
+ + +VG L+G+D F+N++LD+ E G L +++ GN+I
Sbjct: 29 LNGSRHVVGVLRGYDTFMNIVLDNALEV----VGEDQVDLGVVVVRGNSI 74
>UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN F - Encephalitozoon cuniculi
Length = 81
Score = 31.5 bits (68), Expect = 8.1
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 214 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
+ + +K + GTL D++ N+LLD+ TE EG K+ ++ + NNI
Sbjct: 26 VRVALKWGQVYEGTLVASDNYFNILLDECTE----REGEASVKIGEVSIRCNNI 75
>UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces
cerevisiae YFL017wa SNP2 snRNP G protein; n=1;
Kluyveromyces lactis|Rep: Similar to sp|P40204
Saccharomyces cerevisiae YFL017wa SNP2 snRNP G protein -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 71
Score = 31.5 bits (68), Expect = 8.1
Identities = 15/55 (27%), Positives = 34/55 (61%)
Frame = -2
Query: 202 MKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLVP 38
+ +++++G L+G+D F+N++LD+ + EG ++ Q ++ GN+I + P
Sbjct: 16 LNGNRKIIGILRGYDAFLNLVLDN--PIQIFEEG-EVQMGPQTVVRGNSIVSIEP 67
>UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 78
Score = 31.5 bits (68), Expect = 8.1
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 122
+I + ++++G L+GFD +N++L+DV E
Sbjct: 42 QIRVKFIGGRQVIGVLKGFDQLMNLVLEDVKE 73
>UniRef50_Q6BPY4 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 101
Score = 31.5 bits (68), Expect = 8.1
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 226 IGSRIHIIMK-NDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIA 50
IG ++ + +K N E GTL D+++N+ LD +E +K + +I + NN+
Sbjct: 17 IGKQVIVRLKWNKTEYKGTLISIDNYMNLQLDKTSEVIYEDGEKKEEVIGEIFIRCNNVL 76
Query: 49 ML 44
+
Sbjct: 77 FI 78
>UniRef50_A3LX11 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 92
Score = 31.5 bits (68), Expect = 8.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 235 DKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 122
D+ IGS + + +K+ + + G L D F N+LL +V E
Sbjct: 12 DQFIGSNLRVAIKDGRVVTGILTVIDPFGNLLLSNVIE 49
>UniRef50_A2BK21 Cluster: Putative uncharacterized protein; n=1;
Hyperthermus butylicus DSM 5456|Rep: Putative
uncharacterized protein - Hyperthermus butylicus (strain
DSM 5456 / JCM 9403)
Length = 152
Score = 31.5 bits (68), Expect = 8.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFD-DFVNMLLDDV-TEYESTP 107
+G R+ +++ N + GTL GFD +N++L DV E E P
Sbjct: 21 VGKRVEVVLVNGQRYRGTLLGFDHPELNLVLGDVEAEREKVP 62
>UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;
Fungi/Metazoa group|Rep: Uncharacterized protein
C26A3.08 - Schizosaccharomyces pombe (Fission yeast)
Length = 147
Score = 31.5 bits (68), Expect = 8.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 214 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 119
+++ K+ + VG L FD F+N++L D EY
Sbjct: 14 LNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEY 45
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,097,152
Number of Sequences: 1657284
Number of extensions: 7847480
Number of successful extensions: 16213
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 15901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16197
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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