Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d15
         (437 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   3.9  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   5.1  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   6.8  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    20   9.0  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    20   9.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 58  NIAMLVPGGEMPGES*RW 5
           N+A+L P    P  S RW
Sbjct: 249 NVALLCPAQGFPSPSFRW 266


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 290 FFSAYEDFVEFIYCNDNQLVDYL 358
           FF+  E   ++  CND Q+ + L
Sbjct: 45  FFADAEQCDKYYECNDGQITEKL 67


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 226 IGSRIHIIMKNDKEMV 179
           +GS   +I+KN KEMV
Sbjct: 350 LGSDGSVILKNYKEMV 365


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 127 TEYESTPEGRKITKLDQILLNGNN 56
           T Y  TP+GRK  K+ + L + +N
Sbjct: 223 TIYSLTPQGRKEQKVLKSLHSFSN 246


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 127 TEYESTPEGRKITKLDQILLNGNN 56
           T Y  TP+GRK  K+ + L + +N
Sbjct: 223 TIYSLTPQGRKEQKVLKSLHSFSN 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,324
Number of Sequences: 336
Number of extensions: 2211
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)