Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16d15
(437 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 82 3e-17
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 45 6e-06
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 41 7e-05
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 39 4e-04
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 36 0.002
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 32 0.044
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 31 0.059
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 31 0.078
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 31 0.10
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 29 0.31
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 28 0.55
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 27 1.7
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 27 1.7
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 27 1.7
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 2.2
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 6.7
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 6.7
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 82.2 bits (194), Expect = 3e-17
Identities = 38/70 (54%), Positives = 53/70 (75%)
Frame = -2
Query: 238 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 59
+DKCIGS + +IMK+++E GTL GFDD+VN++L DVTEY+ T G K ++LLNGN
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG-VTEKHSEMLLNGN 68
Query: 58 NIAMLVPGGE 29
+ ML+PGG+
Sbjct: 69 GMCMLIPGGK 78
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 44.8 bits (101), Expect = 6e-06
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKIT----KLDQILLNGNNIA 50
RI +++ G L+GFD +N++LDDV E PE K+T KL +++ G +
Sbjct: 35 RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLV 94
Query: 49 MLVP 38
++ P
Sbjct: 95 LIAP 98
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 41.1 bits (92), Expect = 7e-05
Identities = 19/57 (33%), Positives = 36/57 (63%)
Frame = -2
Query: 214 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 44
I + + D + G ++GFD+F+N++LDD + ++ R +L +ILL G+NI ++
Sbjct: 28 IWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKNNKR---ELGRILLKGDNITLI 81
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 38.7 bits (86), Expect = 4e-04
Identities = 16/63 (25%), Positives = 38/63 (60%)
Frame = -2
Query: 232 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
K + ++ + + +++ G L+G+D F+N++L+D E +G K+ K+ + + GN++
Sbjct: 11 KYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLED--SIEEKVDGEKV-KIGSVAIRGNSV 67
Query: 52 AML 44
M+
Sbjct: 68 IMI 70
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 36.3 bits (80), Expect = 0.002
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = -2
Query: 223 GSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 44
G I + +KN + G L+ D+++N+ L +V + P+G K +L + + GNNI L
Sbjct: 12 GRPILVELKNGETFNGHLENCDNYMNLTLREVIR--TMPDGDKFFRLPECYIRGNNIKYL 69
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 31.9 bits (69), Expect = 0.044
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -2
Query: 178 GTLQGFDDFVNMLLDDVTEYESTPE---GRKITKLDQILLNGNNIAMLVPGG 32
GT + D+F+ +L +T E TP+ KIT+ ++ L N A+++ GG
Sbjct: 95 GTKKLIDEFIQEVLMCLTYLEETPDLSLDEKITEFSRLKLTTGNTALILSGG 146
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 31.5 bits (68), Expect = 0.059
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 214 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 119
+++ K+ + VG L FD F+N++L D EY
Sbjct: 14 LNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEY 45
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 31.1 bits (67), Expect = 0.078
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 122
+ ++ +++++ K+++G L+ FD F N++L E
Sbjct: 20 VDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIE 54
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 30.7 bits (66), Expect = 0.10
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 214 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 122
+++ ++ D+E+ G L +D+ +NM+L D E
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 29.1 bits (62), Expect = 0.31
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Frame = -2
Query: 217 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK---ITK---LDQILL 68
++ I +N+K+++ ++ FD NM+L++V TE + T G+K I K + ++ L
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGKAINKDRFISKMFL 101
Query: 67 NGNNIAMLV 41
G+ + ++V
Sbjct: 102 RGDGVVLVV 110
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 28.3 bits (60), Expect = 0.55
Identities = 10/39 (25%), Positives = 25/39 (64%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYEST 110
I + + + +KND + G L+ D F+N+ L++++ +++
Sbjct: 11 IDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDAS 49
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 347 QVDCHYSK*IPRNLRTQKKNDAKFITES 264
Q +CHYSK + R+ KK + + ES
Sbjct: 35 QEECHYSKRLKRSYSATKKKNGNPVLES 62
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 287 HFFSAYEDFVEFIYCNDNQLVDYLIS*SIVL 379
+ FS E + + C DNQ YLIS + VL
Sbjct: 126 NLFSIIEQYDVVLDCTDNQYTRYLISDTCVL 156
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 26.6 bits (56), Expect = 1.7
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = -2
Query: 232 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 53
K + I +KN + GT+ D +N L V + T +GR+ ++ + + GNNI
Sbjct: 9 KLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAV---KMTVKGREPVPVETLSIRGNNI 65
Query: 52 AMLVPGGEMP 23
+ +P
Sbjct: 66 RYYILPDSLP 75
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 2.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRK 95
IGSRI +I K+D VG LQ + + L + T EGRK
Sbjct: 5 IGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGT-EGRK 47
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 341 DCHYSK*IPRNLRTQKKNDAKF 276
DC+ SK IP+N ND+ +
Sbjct: 274 DCYSSKNIPKNTEALPNNDSSY 295
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 226 IGSRIHIIMKNDKEMVGTLQG--FDDFVNMLLDDVTEY 119
IG+ I + K+ + V L+ F N+L++DVTE+
Sbjct: 616 IGALIRSLSKSGPQTVSQLENALLPVFQNVLIEDVTEF 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,858
Number of Sequences: 5004
Number of extensions: 36243
Number of successful extensions: 82
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -