Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16d11
(396 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ... 79 3e-14
UniRef50_A5K998 Cluster: Putative uncharacterized protein; n=1; ... 33 2.0
UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1; ... 33 2.0
UniRef50_A6BIY9 Cluster: Putative uncharacterized protein; n=1; ... 32 3.5
UniRef50_A4J380 Cluster: YD repeat protein; n=1; Desulfotomaculu... 32 4.6
UniRef50_Q8GPA1 Cluster: Eps7I; n=2; Streptococcaceae|Rep: Eps7I... 31 6.1
UniRef50_A5BTA1 Cluster: Putative uncharacterized protein; n=2; ... 31 6.1
UniRef50_UPI00006CB0CF Cluster: hypothetical protein TTHERM_0024... 31 8.1
UniRef50_Q7SXN4 Cluster: Cytoplasmic polyadenylation element-bin... 31 8.1
>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
Bombycoidea|Rep: Putative uncharacterized protein -
Lonomia obliqua (Moth)
Length = 74
Score = 79.0 bits (186), Expect = 3e-14
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = -2
Query: 272 MGFFTALIVNIVGGAVLC-MGGFLIPIVAPLLGFXXXXXXXXXXXXXXXSYYGNLMAGSI 96
MG AL VN+VGGA++ GG L PIVAP+LGF +YYGN++AGS+
Sbjct: 1 MGLLAALAVNLVGGAIIYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSV 60
Query: 95 ISKLTAAAMIAPTP 54
IS+LT+AAM+APTP
Sbjct: 61 ISQLTSAAMLAPTP 74
>UniRef50_A5K998 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 665
Score = 33.1 bits (72), Expect = 2.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 117 EFNGRKHYIKVDCRRHDSTNSISLSKTDNC 28
EFNGR HY+ V + DST+++ + NC
Sbjct: 593 EFNGRTHYVLVLSKGGDSTDAVHYTMRQNC 622
>UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 887
Score = 33.1 bits (72), Expect = 2.0
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 178 PSRGATIGIKNP-PMQRTAPPTMLTIRAV-KNPMILKSQ*LLT 300
PS GA ++P P AP T+R V KNP +LKS LLT
Sbjct: 739 PSNGAAFAPRSPSPSPAPAPSLTATVRFVSKNPTLLKSSYLLT 781
>UniRef50_A6BIY9 Cluster: Putative uncharacterized protein; n=1;
Dorea longicatena DSM 13814|Rep: Putative
uncharacterized protein - Dorea longicatena DSM 13814
Length = 108
Score = 32.3 bits (70), Expect = 3.5
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Frame = -2
Query: 320 LICIVYLVRSYCDLRIMGFFTALIVN-------IVGGAVLCMGGFLIPIVAPLLG 177
LIC++Y++ S+ + +G TAL N I G A++ + F+I I++ +LG
Sbjct: 18 LICMIYIIYSWMSITNVGVVTALTHNNGDAMLLIFGAAIVLIVFFIIDIISLILG 72
>UniRef50_A4J380 Cluster: YD repeat protein; n=1; Desulfotomaculum
reducens MI-1|Rep: YD repeat protein - Desulfotomaculum
reducens MI-1
Length = 2558
Score = 31.9 bits (69), Expect = 4.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 275 IMGFFTALIVNIVGGAVLCMGGFLIPIVAPLLG 177
+ G TAL V ++GGA + G + P+VA L G
Sbjct: 2255 LYGGLTALAVGLIGGAAVGTGDYASPVVAALAG 2287
>UniRef50_Q8GPA1 Cluster: Eps7I; n=2; Streptococcaceae|Rep: Eps7I -
Streptococcus thermophilus
Length = 235
Score = 31.5 bits (68), Expect = 6.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 293 FSPDIQYKLTLDNLYLFIDQQFLDNSGAQC 382
F ++ + + DNL L+ D FLDNS C
Sbjct: 115 FGAEVNHPIVRDNLELYTDISFLDNSNVTC 144
>UniRef50_A5BTA1 Cluster: Putative uncharacterized protein; n=2;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 538
Score = 31.5 bits (68), Expect = 6.1
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = -1
Query: 249 SQHRRRSRSLHGRVFDPNRGTSARLQRIGNNGGKHCSFSPVV--LREFNGRKHYIKVDCR 76
+++R+ ++LH +F+ G ++ LQ+I N GK F+ ++ LR + RK Y++V +
Sbjct: 281 TENRKADKALHTLMFEKLEGDTSILQKI-RNSGKEDLFAELLCFLRFGSLRKSYLQVTSQ 339
Query: 75 R 73
R
Sbjct: 340 R 340
>UniRef50_UPI00006CB0CF Cluster: hypothetical protein
TTHERM_00242610; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00242610 - Tetrahymena
thermophila SB210
Length = 559
Score = 31.1 bits (67), Expect = 8.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 275 SLSHSNFSPDIQYKLTLDNLYLFIDQQFLDNS 370
S + +N DI +KL L NL++++++Q +NS
Sbjct: 86 SQNGNNQQSDITFKLQLSNLFMYVNEQTFENS 117
>UniRef50_Q7SXN4 Cluster: Cytoplasmic polyadenylation
element-binding protein 4; n=20; Euteleostomi|Rep:
Cytoplasmic polyadenylation element-binding protein 4 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 635
Score = 31.1 bits (67), Expect = 8.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 273 HGIFHCPNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNNGGK 148
H F P++QHRR S S H F +L +GNN K
Sbjct: 169 HPHFQHPHNQHRRSSASPHPPPFSHRSAAFNQLPHLGNNLSK 210
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,408,292
Number of Sequences: 1657284
Number of extensions: 7751158
Number of successful extensions: 19510
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19504
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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