Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d10
         (275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   105   9e-25
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   104   3e-24
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   0.65 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   2.0  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   4.6  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   4.6  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   4.6  
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    24   4.6  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    24   4.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   4.6  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    23   6.1  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    23   8.0  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    23   8.0  

>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  105 bits (253), Expect = 9e-25
 Identities = 51/86 (59%), Positives = 58/86 (67%)
 Frame = -1

Query: 266 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 87
           TKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA        
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGT 61

Query: 86  XRMRHLKIVRRALP*WF*RKGKPXAA 9
            RM +LK V R+    F R GKP AA
Sbjct: 62  GRMSYLKKVHRSFKNGF-RSGKPAAA 86


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  104 bits (249), Expect = 3e-24
 Identities = 50/86 (58%), Positives = 58/86 (67%)
 Frame = -1

Query: 266 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 87
           TKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA        
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGT 61

Query: 86  XRMRHLKIVRRALP*WF*RKGKPXAA 9
            RM +LK V R+    F R GKP +A
Sbjct: 62  GRMSYLKKVHRSFKNGF-RAGKPTSA 86


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 0.65
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 174
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = -1

Query: 233 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 150
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 200 YHIFCITYGSYFGAYRSLRYPSSE 271
           Y  FCI   S F    SL YP+S+
Sbjct: 608 YFQFCIESDSKFDEGTSLEYPNSD 631


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 165 PMWISCSKITILPLVSEG*AQEDYW 91
           P W+SC+++ +L    +    +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 242  KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 150
            KR N    L  R       +Q ++C  CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 186 HSKIKMRPMWISCSKITILPLVSEG*AQEDYWNWPHASFEDCQEGASVMVLKEGETXRRP 7
           H+K ++  +  S S +++L    E    +D  NW     E   E A +  + EG+T   P
Sbjct: 91  HNKYELGAVESSTSSLSLLQSKEE----DDSSNWETEDSESAVEEAELPTIFEGKTVISP 146


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 263 KGTSSFGKRRNKTHTLCRRCGRSS 192
           KGTS     R+ T+ L R C +SS
Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 170 ILIFECDMTIYHIFCITYGSYFGAYRSLR 256
           +LI+ CD  +++  CI + S +  + S++
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVK 239


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 259 VPQASVSAEIRPIRYAEDVVDRHITF 182
           +PQ S+ +      Y ED++D +++F
Sbjct: 704 IPQGSILSSFLCHFYMEDLIDEYLSF 729


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +1

Query: 163 WAHFDF*M*YDDLPHLLHNVWVLFRRLPK 249
           W+H D     D   H LHN W    R  K
Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAK 186


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 189 SHSKIKMRPMWISCSKITILP 127
           SHS   MRP+ I  + +T+ P
Sbjct: 697 SHSTFTMRPLSIERTTLTVTP 717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,014,196
Number of Sequences: 5004
Number of extensions: 17704
Number of successful extensions: 42
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)