Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16d10
(275 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11567-1|AAA62148.1| 97|Homo sapiens ribosomal protein L37 pro... 108 3e-24
D23661-1|BAA04888.1| 97|Homo sapiens ribosomal protein L37 pro... 108 3e-24
CR456890-1|CAG33171.1| 97|Homo sapiens RPL37 protein. 108 3e-24
BC084576-1|AAH84576.1| 97|Homo sapiens RPL37 protein protein. 108 3e-24
BC079477-1|AAH79477.1| 97|Homo sapiens ribosomal protein L37 p... 108 3e-24
AB061834-1|BAB79472.1| 97|Homo sapiens ribosomal protein L37 p... 108 3e-24
S79979-1|AAB47039.2| 97|Homo sapiens ribosomal protein L37 pro... 106 1e-23
AL355305-3|CAI14559.1| 436|Homo sapiens protein ( Human DNA seq... 29 2.0
AL355305-2|CAI14560.1| 360|Homo sapiens protein ( Human DNA seq... 29 2.0
BC033448-1|AAH33448.1| 460|Homo sapiens chromosome 6 open readi... 28 4.6
>L11567-1|AAA62148.1| 97|Homo sapiens ribosomal protein L37
protein.
Length = 97
Score = 108 bits (260), Expect = 3e-24
Identities = 48/71 (67%), Positives = 53/71 (74%)
Frame = -1
Query: 266 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 87
TKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 2 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGT 61
Query: 86 XRMRHLKIVRR 54
RMRHLKIV R
Sbjct: 62 GRMRHLKIVYR 72
>D23661-1|BAA04888.1| 97|Homo sapiens ribosomal protein L37
protein.
Length = 97
Score = 108 bits (260), Expect = 3e-24
Identities = 48/71 (67%), Positives = 53/71 (74%)
Frame = -1
Query: 266 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 87
TKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 2 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGT 61
Query: 86 XRMRHLKIVRR 54
RMRHLKIV R
Sbjct: 62 GRMRHLKIVYR 72
>CR456890-1|CAG33171.1| 97|Homo sapiens RPL37 protein.
Length = 97
Score = 108 bits (260), Expect = 3e-24
Identities = 48/71 (67%), Positives = 53/71 (74%)
Frame = -1
Query: 266 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 87
TKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 2 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGT 61
Query: 86 XRMRHLKIVRR 54
RMRHLKIV R
Sbjct: 62 GRMRHLKIVYR 72
>BC084576-1|AAH84576.1| 97|Homo sapiens RPL37 protein protein.
Length = 97
Score = 108 bits (260), Expect = 3e-24
Identities = 48/71 (67%), Positives = 53/71 (74%)
Frame = -1
Query: 266 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 87
TKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 2 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGT 61
Query: 86 XRMRHLKIVRR 54
RMRHLKIV R
Sbjct: 62 GRMRHLKIVYR 72
>BC079477-1|AAH79477.1| 97|Homo sapiens ribosomal protein L37
protein.
Length = 97
Score = 108 bits (260), Expect = 3e-24
Identities = 48/71 (67%), Positives = 53/71 (74%)
Frame = -1
Query: 266 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 87
TKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 2 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGT 61
Query: 86 XRMRHLKIVRR 54
RMRHLKIV R
Sbjct: 62 GRMRHLKIVYR 72
>AB061834-1|BAB79472.1| 97|Homo sapiens ribosomal protein L37
protein.
Length = 97
Score = 108 bits (260), Expect = 3e-24
Identities = 48/71 (67%), Positives = 53/71 (74%)
Frame = -1
Query: 266 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 87
TKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 2 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGT 61
Query: 86 XRMRHLKIVRR 54
RMRHLKIV R
Sbjct: 62 GRMRHLKIVYR 72
>S79979-1|AAB47039.2| 97|Homo sapiens ribosomal protein L37
protein.
Length = 97
Score = 106 bits (254), Expect = 1e-23
Identities = 47/71 (66%), Positives = 52/71 (73%)
Frame = -1
Query: 266 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 87
TKGTSSFGKRRNKTHTLCRRCG +YH+QKS C +CGYPA + R Y+WS KA
Sbjct: 2 TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGT 61
Query: 86 XRMRHLKIVRR 54
RM HLKIV R
Sbjct: 62 GRMSHLKIVYR 72
>AL355305-3|CAI14559.1| 436|Homo sapiens protein ( Human DNA
sequence from clone RP11-487F23 on chromosome 6. ).
Length = 436
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 177 IKMRPMWISCSKITILPLVSEG*AQEDYW 91
IK RP W CSK LP V+E ++ W
Sbjct: 253 IKRRPPWQICSKFGALPFVAEKPSRTTSW 281
>AL355305-2|CAI14560.1| 360|Homo sapiens protein ( Human DNA
sequence from clone RP11-487F23 on chromosome 6. ).
Length = 360
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 177 IKMRPMWISCSKITILPLVSEG*AQEDYW 91
IK RP W CSK LP V+E ++ W
Sbjct: 177 IKRRPPWQICSKFGALPFVAEKPSRTTSW 205
>BC033448-1|AAH33448.1| 460|Homo sapiens chromosome 6 open reading
frame 182 protein.
Length = 460
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 177 IKMRPMWISCSKITILPLVSE 115
IK RP W CSK LP V+E
Sbjct: 253 IKRRPPWQICSKFGALPFVAE 273
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,665,600
Number of Sequences: 237096
Number of extensions: 631781
Number of successful extensions: 1282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 76,859,062
effective HSP length: 69
effective length of database: 60,499,438
effective search space used: 1330987636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -