Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d10
         (275 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...    91   1e-19
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...    88   1e-18
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    31   0.12 
U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    31   0.15 
Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical pr...    28   0.82 
AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine re...    27   1.9  
L23646-5|ABD94102.1|  145|Caenorhabditis elegans Hypothetical pr...    26   3.3  
L23646-4|AAA28039.1|  152|Caenorhabditis elegans Hypothetical pr...    26   3.3  
Z83105-2|CAB05483.1|  434|Caenorhabditis elegans Hypothetical pr...    25   5.8  

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = -1

Query: 266 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 87
           TKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA CGYP AK R+Y+W  K+        
Sbjct: 2   TKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYPDAKKRTYNWGAKSIRRRTTGT 61

Query: 86  XRMRHLKIV 60
            R RHL+ V
Sbjct: 62  GRTRHLRDV 70


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 37/69 (53%), Positives = 48/69 (69%)
 Frame = -1

Query: 266 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXX 87
           TKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA CGY  AK R+Y+W  K+        
Sbjct: 2   TKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGT 61

Query: 86  XRMRHLKIV 60
            R RHL+ V
Sbjct: 62  GRTRHLRDV 70


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 251 SFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 144
           ++ K    TH  C +CG+ + +    KC  CG P A
Sbjct: 93  TYNKNNFSTHHFCNKCGKVAQN--SKKCKHCGGPVA 126


>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 251 SFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 144
           ++ K    TH  C +CG+ + +    KC  CG P A
Sbjct: 165 TYNKNNFSTHHFCNKCGKVAQN--SKKCKYCGGPVA 198


>Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical
           protein C17H1.9 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 238 AEIRPIRYAEDVVDRH---ITFKNQNAPNVDILQQNYDP 131
           A+++ I+Y  D +++H   + F+NQ   +   L+ N DP
Sbjct: 230 ADLKKIKYTSDEIEKHKSKLEFRNQQLESSRTLEINADP 268


>AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein68 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +2

Query: 158 HIGRILIFECDMTIYHIFCITYGSYFGAYRSLRYPS 265
           H G +++F  +++++  F I+   +F  +  L+Y S
Sbjct: 77  HCGFVILFCYELSVFTHFAISINRFFAVWMPLKYES 112


>L23646-5|ABD94102.1|  145|Caenorhabditis elegans Hypothetical
           protein F44E2.6b protein.
          Length = 145

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 269 QTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPA 147
           +T  T  F     K   +C  CG   ++      A CG+PA
Sbjct: 41  ETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 81


>L23646-4|AAA28039.1|  152|Caenorhabditis elegans Hypothetical
           protein F44E2.6 protein.
          Length = 152

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 269 QTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPA 147
           +T  T  F     K   +C  CG   ++      A CG+PA
Sbjct: 48  ETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 88


>Z83105-2|CAB05483.1|  434|Caenorhabditis elegans Hypothetical
           protein F14H3.2 protein.
          Length = 434

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 197 IYHIFCITYGSYFGAYRSLRYPSSE 271
           I H F +T G+YFG +   R+  +E
Sbjct: 33  ILHEFLMTAGAYFGVFLVFRFAINE 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,616,324
Number of Sequences: 27780
Number of extensions: 101836
Number of successful extensions: 240
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)