Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d09
         (484 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080131-1|AAD19341.1|  312|Drosophila melanogaster ribosomal pr...   104   6e-23
U42587-1|AAB17433.1|  299|Drosophila melanogaster ribosomal prot...   104   7e-23
BT025837-1|ABF85737.1|  299|Drosophila melanogaster IP11377p pro...   104   7e-23
AY118961-1|AAM50821.1|  299|Drosophila melanogaster LD40873p pro...   104   7e-23
AL132792-4|CAB60023.1|  299|Drosophila melanogaster EG:BACR19J1....   104   7e-23
AE014298-104|AAF45546.1|  299|Drosophila melanogaster CG7434-PA ...   104   7e-23
AY089455-1|AAL90193.1|  312|Drosophila melanogaster AT26853p pro...    74   9e-14
AE013599-3561|AAF46972.1|  312|Drosophila melanogaster CG9871-PA...    74   9e-14
AE013599-1487|AAF58510.2|  246|Drosophila melanogaster CG13154-P...    30   1.4  

>AF080131-1|AAD19341.1|  312|Drosophila melanogaster ribosomal
           protein L22 protein.
          Length = 312

 Score =  104 bits (250), Expect = 6e-23
 Identities = 49/99 (49%), Positives = 65/99 (65%)
 Frame = -3

Query: 323 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 144
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 203 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLTVSSDVHF 262

Query: 143 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNI 27
           S                 RDW+RVVA+  D+YELRYF I
Sbjct: 263 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 301


>U42587-1|AAB17433.1|  299|Drosophila melanogaster ribosomal protein
           Rpl22 protein.
          Length = 299

 Score =  104 bits (249), Expect = 7e-23
 Identities = 49/99 (49%), Positives = 65/99 (65%)
 Frame = -3

Query: 323 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 144
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHF 249

Query: 143 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNI 27
           S                 RDW+RVVA+  D+YELRYF I
Sbjct: 250 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 288


>BT025837-1|ABF85737.1|  299|Drosophila melanogaster IP11377p
           protein.
          Length = 299

 Score =  104 bits (249), Expect = 7e-23
 Identities = 49/99 (49%), Positives = 65/99 (65%)
 Frame = -3

Query: 323 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 144
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHF 249

Query: 143 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNI 27
           S                 RDW+RVVA+  D+YELRYF I
Sbjct: 250 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 288


>AY118961-1|AAM50821.1|  299|Drosophila melanogaster LD40873p
           protein.
          Length = 299

 Score =  104 bits (249), Expect = 7e-23
 Identities = 49/99 (49%), Positives = 65/99 (65%)
 Frame = -3

Query: 323 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 144
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHF 249

Query: 143 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNI 27
           S                 RDW+RVVA+  D+YELRYF I
Sbjct: 250 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 288


>AL132792-4|CAB60023.1|  299|Drosophila melanogaster
           EG:BACR19J1.4,FBgn0015288;RpL22 protein.
          Length = 299

 Score =  104 bits (249), Expect = 7e-23
 Identities = 49/99 (49%), Positives = 65/99 (65%)
 Frame = -3

Query: 323 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 144
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHF 249

Query: 143 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNI 27
           S                 RDW+RVVA+  D+YELRYF I
Sbjct: 250 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 288


>AE014298-104|AAF45546.1|  299|Drosophila melanogaster CG7434-PA
           protein.
          Length = 299

 Score =  104 bits (249), Expect = 7e-23
 Identities = 49/99 (49%), Positives = 65/99 (65%)
 Frame = -3

Query: 323 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPF 144
           +L+FTIDCT+ AEDSI+DV +FEKY+K  +KV GK NNL N+V   R K K+ +++D+ F
Sbjct: 190 SLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHF 249

Query: 143 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNI 27
           S                 RDW+RVVA+  D+YELRYF I
Sbjct: 250 SKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRI 288


>AY089455-1|AAL90193.1|  312|Drosophila melanogaster AT26853p
           protein.
          Length = 312

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
 Frame = -3

Query: 317 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKT-KVAITADIPFS 141
           +F IDC   AED ILD+ +FE+YLK H+K++ K N L + V   R K   + I + + FS
Sbjct: 193 RFVIDCACVAEDMILDLADFEQYLKTHIKIKNKLNQLKDQVTFERTKNFSLIIHSGVHFS 252

Query: 140 XXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNI 27
                            RDWLRVV++A D + + YF I
Sbjct: 253 KRYFKYLTKRYLKKVSLRDWLRVVSTAKDTFAMTYFKI 290


>AE013599-3561|AAF46972.1|  312|Drosophila melanogaster CG9871-PA
           protein.
          Length = 312

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
 Frame = -3

Query: 317 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKT-KVAITADIPFS 141
           +F IDC   AED ILD+ +FE+YLK H+K++ K N L + V   R K   + I + + FS
Sbjct: 193 RFVIDCACVAEDMILDLADFEQYLKTHIKIKNKLNQLKDQVTFERTKNFSLIIHSGVHFS 252

Query: 140 XXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNI 27
                            RDWLRVV++A D + + YF I
Sbjct: 253 KRYFKYLTKRYLKKVSLRDWLRVVSTAKDTFAMTYFKI 290


>AE013599-1487|AAF58510.2|  246|Drosophila melanogaster CG13154-PA
           protein.
          Length = 246

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 461 LLYTCSFATMAVTKKPAAKKAQLH 390
           +L+ C+F    V K P A++AQLH
Sbjct: 12  VLFLCAFCCSVVAKPPTARRAQLH 35


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,967,351
Number of Sequences: 53049
Number of extensions: 339865
Number of successful extensions: 699
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1684597257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)