Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16d07
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 252 2e-67
04_01_0103 + 1082077-1082167,1083037-1085477 250 1e-66
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 224 7e-59
01_06_0662 + 30987187-30987277,30987825-30990214 223 2e-58
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 179 3e-45
03_05_0511 + 25056018-25059107 106 2e-23
02_04_0148 - 20198407-20201424 95 4e-20
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 52 4e-07
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 49 5e-06
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 38 0.011
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 37 0.020
01_04_0109 + 16112581-16112934 32 0.42
04_01_0330 - 4369326-4370852 30 2.3
09_06_0142 - 21107878-21109104 28 6.9
07_03_0698 - 20765305-20768526 28 9.1
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 252 bits (617), Expect = 2e-67
Identities = 113/167 (67%), Positives = 135/167 (80%)
Frame = -3
Query: 747 VAGFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPR 568
VAGFQWA KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA LTA+PR
Sbjct: 665 VAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPR 724
Query: 567 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 388
L+EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++
Sbjct: 725 LLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQ 784
Query: 387 LRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 247
LR+ T GQAFPQCVFDHW ++ DP E S+ +VQ+ RKRKGLKE
Sbjct: 785 LRAATSGQAFPQCVFDHWDMMTSDPLEAGSQASTLVQDIRKRKGLKE 831
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 250 bits (611), Expect = 1e-66
Identities = 112/167 (67%), Positives = 134/167 (80%)
Frame = -3
Query: 747 VAGFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPR 568
VAGFQWA KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA LTA+PR
Sbjct: 665 VAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPR 724
Query: 567 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 388
L+EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++
Sbjct: 725 LLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQ 784
Query: 387 LRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 247
LR+ T GQAFPQCVFDHW ++ DP E S+ +V + RKRKGLKE
Sbjct: 785 LRAATSGQAFPQCVFDHWDMMTSDPLEVSSQANQLVLDIRKRKGLKE 831
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 224 bits (547), Expect = 7e-59
Identities = 100/167 (59%), Positives = 125/167 (74%)
Frame = -3
Query: 747 VAGFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPR 568
VAGFQWA KEG +AEEN+RGV F + DVTLH+D+IHRGGGQ+IPT RR +YA LTA PR
Sbjct: 675 VAGFQWASKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQLTASPR 734
Query: 567 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 388
LMEP+Y +IQ P+ AVG +YGVLN R G + EES+ GTP+ ++ YLPV +SF FT
Sbjct: 735 LMEPMYQVDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFDFTEK 794
Query: 387 LRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 247
LR+ T GQAFPQC+F HWQ + DP + S+ V+ + RKRKGLK+
Sbjct: 795 LRAETSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVITDIRKRKGLKD 841
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 223 bits (544), Expect = 2e-58
Identities = 103/153 (67%), Positives = 123/153 (80%), Gaps = 2/153 (1%)
Frame = -3
Query: 747 VAGFQWAXKEGVMAEENLRG--VRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 574
VAGFQWA KEG +AEEN+RG + F + DV LH+DAIHRGGGQIIPT RR +YA LTA+
Sbjct: 661 VAGFQWASKEGALAEENMRGRGICFEVCDVILHSDAIHRGGGQIIPTARRVIYAAQLTAK 720
Query: 573 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 394
PRL+EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q GTP++ +KAYLPV ESFGFT
Sbjct: 721 PRLLEPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFT 780
Query: 393 ADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSK 295
+ LR+ T GQAFP VFDHW++L DP EP ++
Sbjct: 781 STLRAATSGQAFPLFVFDHWEMLSVDPLEPGTR 813
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 179 bits (435), Expect = 3e-45
Identities = 90/179 (50%), Positives = 114/179 (63%), Gaps = 12/179 (6%)
Frame = -3
Query: 747 VAGFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPR 568
V GFQW +EG + +E +R V+F I + + + +HRGGGQIIPT RR +Y+ L A PR
Sbjct: 791 VQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYSAFLMANPR 850
Query: 567 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 388
LMEPVY EIQ P V IY VL+RRRGHV + GTP+++VKA+LPV ESFGF D
Sbjct: 851 LMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVIESFGFETD 910
Query: 387 LRSNTGGQAFPQCVFDHWQVLPGD---------PCEP---QSKPYNVVQETRKRKGLKE 247
LR +T GQAF VFDHW ++PGD P EP Q + +TR+RKG+ E
Sbjct: 911 LRYHTQGQAFCLSVFDHWAIVPGDPLDKNIVLRPLEPAPIQHLAREFMVKTRRRKGMSE 969
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 106 bits (255), Expect = 2e-23
Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Frame = -3
Query: 747 VAGFQWAXKEGVMAEENLRGVRFNI--YDVTLHTDAIHRG------GGQIIPTTRRCLYA 592
V+GFQ A G + +E + G+ F + Y H+DA + GQ+I +
Sbjct: 820 VSGFQLATNAGPLCDEPMWGLVFVVEPYIFCDHSDAANHSEQYNIFSGQVITAVKEACRE 879
Query: 591 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 412
++ +PRL+E +Y CE+ P +G Y VL+R+R V +E GT +F V AYLPV
Sbjct: 880 AVVQNKPRLVEAMYFCELTTPTEQLGATYAVLSRKRARVLKEEMQEGTSLFTVHAYLPVA 939
Query: 411 ESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 313
ES GF+ +LRS T G A V HW+ +P DP
Sbjct: 940 ESVGFSNELRSVTAGAASALLVLSHWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 95.5 bits (227), Expect = 4e-20
Identities = 55/152 (36%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Frame = -3
Query: 741 GFQWAXKEGVMAEENLRGVRFNIYDVTL---------HTDAIHRGGGQIIPTTRRCLYAC 589
GFQ A G + E G+ F + L +D GQII R A
Sbjct: 797 GFQLATNAGPLCGEPTWGLIFLVKPYILPDSADASNNQSDHYSTFSGQIITAVREACQAA 856
Query: 588 LLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNE 409
+L ++PRL+EP+Y CE+ P +G +Y VL R V +E GT +F V AYL V E
Sbjct: 857 ILESKPRLVEPMYFCELTTPTEQLGSMYAVLGNCRARVLKEEMQEGTSLFTVHAYLSVAE 916
Query: 408 SFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 313
S F+ LR+ T G A F HW+ +P DP
Sbjct: 917 SSEFSKKLRNATAGAASALLAFSHWETVPQDP 948
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 52.4 bits (120), Expect = 4e-07
Identities = 31/89 (34%), Positives = 46/89 (51%)
Frame = -3
Query: 588 LLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNE 409
L A PRL+EP+ E+ PE +G + G LN RRG V G + +V A++P+ E
Sbjct: 644 LRKAGPRLLEPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGDKPG-GLKVVDAFVPLAE 702
Query: 408 SFGFTADLRSNTGGQAFPQCVFDHWQVLP 322
F + + LR T G+A + V+P
Sbjct: 703 MFQYVSTLRGMTKGRASYTMQLAKFDVVP 731
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 48.8 bits (111), Expect = 5e-06
Identities = 32/126 (25%), Positives = 56/126 (44%)
Frame = -3
Query: 741 GFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 562
GF+ A G + + +R + D H A+ + C A+P ++
Sbjct: 617 GFKEACNSGSLIGHPVENIRIVLTDGASH--AVDSSELAFKLASIYAFRQCYAAARPVIL 674
Query: 561 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 382
EPV E++ P G + G +N+R+G + Q +V ++P+N FG++ LR
Sbjct: 675 EPVMKVELKVPTEFQGTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNMFGYSTALR 732
Query: 381 SNTGGQ 364
S T G+
Sbjct: 733 SMTQGK 738
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/89 (22%), Positives = 38/89 (42%)
Frame = -3
Query: 582 TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 403
T +L EP + ++ PE +G + +L +RRG + + ++K +P
Sbjct: 497 TVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLI 556
Query: 402 GFTADLRSNTGGQAFPQCVFDHWQVLPGD 316
G + + + G A +FD + GD
Sbjct: 557 GLRNAVLTASRGTAILNTIFDSYGPWAGD 585
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 410 SRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD 255
S S +P +P P D PS+ +T G S+ +N SP+ +Y K G D
Sbjct: 19 STSARVPGVIPKPIDLPSQRGTATQGDKSMPPASNAWGSPSVMYPKNGGGSD 70
>01_04_0109 + 16112581-16112934
Length = 117
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -1
Query: 413 MSRSVLLP--ICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGK 258
M+ VL P + +P+PA R R+ +T R++ +++ R PTT +R +G+
Sbjct: 1 MATEVLRPHNVLLPSPAQRRIRATAATHQRTANNHQSDARTKPTTAGSRRRQGR 54
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 614 VGMIWPPPLWMASVWSVTS 670
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>09_06_0142 - 21107878-21109104
Length = 408
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 289 VGLALRFARVSREDLPMVEYALREGLS-AGVGTQIGSKTER 408
V L L++ E LP++ A REG++ AGV +GS R
Sbjct: 171 VDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASR 211
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -3
Query: 696 LRGVRFNIYDVTLHTDAIHRG----GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 535
L G + ++ D+ L D +HRG ++ P +L P+L+E +++C I+
Sbjct: 870 LSGTKASLIDLFLQVDKLHRGLLSLSIRMDPPGNWDAIDAILLRPPKLLESLHICSIR 927
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,431,485
Number of Sequences: 37544
Number of extensions: 478847
Number of successful extensions: 1210
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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