Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d07
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   315   2e-86
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   315   2e-86
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...   174   5e-44
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.       174   5e-44
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    76   2e-14
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    47   2e-05
Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical pr...    42   6e-04
AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical protein
            F25H5.4 protein.
          Length = 852

 Score =  315 bits (774), Expect = 2e-86
 Identities = 140/170 (82%), Positives = 155/170 (91%)
 Frame = -3

Query: 747  VAGFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPR 568
            VAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR  YA +LTA+PR
Sbjct: 674  VAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPR 733

Query: 567  LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 388
            L+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTAD
Sbjct: 734  LLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTAD 793

Query: 387  LRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 238
            LRSNTGGQAFPQCVFDHWQVLPGDP E  +KP  +V +TRKRKGLKEG+P
Sbjct: 794  LRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
            protein.
          Length = 852

 Score =  315 bits (774), Expect = 2e-86
 Identities = 140/170 (82%), Positives = 155/170 (91%)
 Frame = -3

Query: 747  VAGFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPR 568
            VAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR  YA +LTA+PR
Sbjct: 674  VAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPR 733

Query: 567  LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 388
            L+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTAD
Sbjct: 734  LLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTAD 793

Query: 387  LRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 238
            LRSNTGGQAFPQCVFDHWQVLPGDP E  +KP  +V +TRKRKGLKEG+P
Sbjct: 794  LRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score =  174 bits (424), Expect = 5e-44
 Identities = 83/179 (46%), Positives = 113/179 (63%), Gaps = 12/179 (6%)
 Frame = -3

Query: 747  VAGFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPR 568
            V GFQWA +EG + EE +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+  L A PR
Sbjct: 771  VQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPR 830

Query: 567  LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 388
            LMEP Y  E+  P   V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  D
Sbjct: 831  LMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETD 890

Query: 387  LRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 247
            LR +T GQAF    F HWQ++PGDP +          Q  P+     + +TR+RKGL E
Sbjct: 891  LRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 949


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score =  174 bits (424), Expect = 5e-44
 Identities = 83/179 (46%), Positives = 113/179 (63%), Gaps = 12/179 (6%)
 Frame = -3

Query: 747  VAGFQWAXKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPR 568
            V GFQWA +EG + EE +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+  L A PR
Sbjct: 646  VQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPR 705

Query: 567  LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 388
            LMEP Y  E+  P   V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  D
Sbjct: 706  LMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETD 765

Query: 387  LRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 247
            LR +T GQAF    F HWQ++PGDP +          Q  P+     + +TR+RKGL E
Sbjct: 766  LRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 824


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical protein
            K10C3.5a protein.
          Length = 894

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
 Frame = -3

Query: 747  VAGFQWAXKEGVMAEENLRGVRFNI--YDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 574
            VAGF+     G +  E + G+   +  ++V     AI   GGQ++   +    A      
Sbjct: 695  VAGFELFCNTGPLCNEIMHGIAVIVEEWNVDEEDGAI---GGQMMTAIKASCSAAAKKLA 751

Query: 573  PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 394
             RL+  +Y C +     A+G ++ VL++R+  V  E     T +F V + +PV ESF F 
Sbjct: 752  LRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFC 811

Query: 393  ADLRSNTGGQAFPQCVFDHWQVLPGDP 313
              LR  T G A  Q  F HWQV+  DP
Sbjct: 812  DQLRKFTSGMASAQLQFSHWQVIDEDP 838


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 24/55 (43%), Positives = 28/55 (50%)
 Frame = -3

Query: 477 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 313
           V  E     T +F V + +PV ESF F   LR  T G A  Q  F HWQV+  DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649


>Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical
           protein F29C12.4 protein.
          Length = 750

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 30/119 (25%), Positives = 52/119 (43%)
 Frame = -3

Query: 720 EGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCE 541
           EG + +  + G+   I D + H  A+      +I T +  +      A   L+EP+   E
Sbjct: 593 EGPLIKSRIAGIHVRIQDGSTH--AVDSTEIAMINTMQNMMRESFEKANWLLLEPIMKVE 650

Query: 540 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 364
              P    G +   L +R   +       G    I +A  P+++ FG+T++LRS T G+
Sbjct: 651 ATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELRSLTEGK 707


>AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical
           protein Y119D3B.14 protein.
          Length = 689

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
 Frame = -3

Query: 633 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 472
           GG+I P       ++C+   L + +  L EPV   +I+   +     I   L RRR H  
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624

Query: 471 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 367
                  T +  + A LP++E+   +  +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 89  LLSHLRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 208
           +L+ LR+C+       C + TC K FP ++V L+  ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 322 REDLPMVEYALREGLSAGVGTQIGSKTERLID 417
           +ED+  +EY + E  ++ +GTQ+  KT   +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
            F22E10.2 protein.
          Length = 1324

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 633  GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 487
            G Q +  T RCL A +L  +  +M   +  +    + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,106,508
Number of Sequences: 27780
Number of extensions: 403927
Number of successful extensions: 981
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)