Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d06
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.6  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.7  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 173 NPQKSLKSCSSTRKLSLPSKRCAPQ 99
           +P     S +S   +S+PS  C+PQ
Sbjct: 21  SPMTPTYSMNSMSCVSMPSMNCSPQ 45


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 131 AFLYCCNFSDFFGGFVTPRSRNV 199
           A++YC  +SD      +PR+R V
Sbjct: 192 AWVYCTRYSDRPSSGRSPRTRRV 214


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -1

Query: 650 NVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQ--RNE 477
           N   + AL   ++ + +++    S++ DSL D+  ++DKL    L  ++ +Q  Q  +N 
Sbjct: 342 NQDKIVALRQEQETLKSQVQRE-SDVVDSLKDVIEIVDKLLNPDL-GLSLLQVAQIFKNL 399

Query: 476 LNN 468
           L N
Sbjct: 400 LEN 402


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = -3

Query: 237 DKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQY 139
           DK         A+  R +    PP + E  QQY
Sbjct: 117 DKKDDDSPALRALLTRPQAKKTPPNQYENFQQY 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,540
Number of Sequences: 336
Number of extensions: 2979
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)