Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d05
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   3.2  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    26   5.6  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    25   9.8  

>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 817 ILLLELKPSNILRLFSTELLLADDETVQYYIGLETASKFSFVLIT 683
           +LLL +  SNILRLF    L A    + Y +  E    F  V+ T
Sbjct: 544 LLLLSVMKSNILRLFYVLFLFACFYGLDYILCAELLQAFLRVVFT 588


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 144 LFASKGISINVPSFLKGKSQIPGAQLEIDQKLASQRVHI 28
           L+     S +VP  +K  S  P A L+ID+   + R+ +
Sbjct: 305 LYTDTSTSSSVPINVKPNSTTPHASLQIDENKPTTRIQV 343


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 155 LKPLSAIILSPESQICSSLLLSTICRSLAE 244
           L  L AI  +P+S  CS   +S IC++  E
Sbjct: 218 LMELGAITCTPQSPRCSVCPISEICKAYQE 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,874
Number of Sequences: 5004
Number of extensions: 57781
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)