Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d05
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341...    29   4.5  
11_04_0064 - 13053642-13053791,13053845-13053915,13054123-130542...    29   5.9  

>05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,
            3413770-3413881,3414309-3414489,3414714-3414896,
            3415133-3415315,3416062-3416131,3416413-3416522,
            3416604-3416908,3417079-3417175,3417622-3417765,
            3418217-3418303,3418387-3418473,3418566-3418706,
            3418805-3418930,3419166-3419264,3419690-3419757,
            3420275-3420341,3420713-3420883,3420959-3421048,
            3421831-3421911,3423397-3423470,3423784-3423855,
            3423925-3424017,3424138-3424204
          Length = 1030

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 339  SFSSYKNKNTLKFLVGASPGGLLSY 265
            SFSS+  K  LKF+ G S G LL +
Sbjct: 943  SFSSHNQKKFLKFVTGCSRGPLLGF 967


>11_04_0064 -
           13053642-13053791,13053845-13053915,13054123-13054227,
           13054269-13054275,13054614-13054906,13055064-13055142,
           13055322-13055551,13055646-13055792,13055988-13056067,
           13056318-13056651,13057155-13057227,13057727-13057750,
           13058297-13058497
          Length = 597

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = -2

Query: 396 IDGTKIGIQKPSQPDAQKASFSSYKNKNTLKFLVGASPGGLLSYVSNGYAGSASDRQIV 220
           I GT I I   S+   + A F + K+  ++  ++       ++YVS+G+ GSA+D +++
Sbjct: 135 IGGTHIPISIASE---KAAPFRNRKSTLSINVMIVCDFDHKITYVSSGWEGSATDSRVL 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,318,119
Number of Sequences: 37544
Number of extensions: 327420
Number of successful extensions: 652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)